Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.26■■□□□ 1.15
HADHAP40939 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
HADHAP40939 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.26■■□□□ 1.15
HADHAP40939 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.26■■□□□ 1.15
HADHAP40939 EP400NL-214ENST00000641289 2402 ntBASIC22.26■■□□□ 1.15
HADHAP40939 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
HADHAP40939 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HADHAP40939 AC242852.2-201ENST00000615738 1807 ntBASIC22.25■■□□□ 1.15
HADHAP40939 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HADHAP40939 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.25■■□□□ 1.15
HADHAP40939 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.25■■□□□ 1.15
HADHAP40939 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.25■■□□□ 1.15
HADHAP40939 AL512631.2-201ENST00000604634 923 ntBASIC22.25■■□□□ 1.15
HADHAP40939 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.25■■□□□ 1.15
HADHAP40939 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HADHAP40939 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.25■■□□□ 1.15
HADHAP40939 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HADHAP40939 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HADHAP40939 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
HADHAP40939 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.24■■□□□ 1.15
HADHAP40939 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 SRD5A1P1-201ENST00000442297 786 ntBASIC22.24■■□□□ 1.15
HADHAP40939 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.24■■□□□ 1.15
HADHAP40939 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.24■■□□□ 1.15
HADHAP40939 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HADHAP40939 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HADHAP40939 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.24■■□□□ 1.15
HADHAP40939 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HADHAP40939 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HADHAP40939 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HADHAP40939 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
HADHAP40939 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HADHAP40939 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.23■■□□□ 1.15
HADHAP40939 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.23■■□□□ 1.15
HADHAP40939 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.23■■□□□ 1.15
HADHAP40939 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.23■■□□□ 1.15
HADHAP40939 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.23■■□□□ 1.15
HADHAP40939 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.23■■□□□ 1.15
HADHAP40939 AC009086.3-201ENST00000623486 1008 ntBASIC22.23■■□□□ 1.15
HADHAP40939 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
HADHAP40939 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.23■■□□□ 1.15
HADHAP40939 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HADHAP40939 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HADHAP40939 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
HADHAP40939 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.22■■□□□ 1.15
HADHAP40939 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HADHAP40939 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HADHAP40939 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
HADHAP40939 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC22.22■■□□□ 1.15
HADHAP40939 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.22■■□□□ 1.15
HADHAP40939 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.22■■□□□ 1.15
HADHAP40939 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HADHAP40939 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HADHAP40939 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.21■■□□□ 1.15
HADHAP40939 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.21■■□□□ 1.15
HADHAP40939 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
HADHAP40939 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HADHAP40939 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.21■■□□□ 1.15
HADHAP40939 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HADHAP40939 AC092171.4-201ENST00000609130 632 ntBASIC22.21■■□□□ 1.15
HADHAP40939 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HADHAP40939 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
HADHAP40939 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HADHAP40939 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.2■■□□□ 1.15
HADHAP40939 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
HADHAP40939 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.2■■□□□ 1.14
HADHAP40939 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.2■■□□□ 1.14
HADHAP40939 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HADHAP40939 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HADHAP40939 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.2■■□□□ 1.14
HADHAP40939 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HADHAP40939 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
HADHAP40939 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.19■■□□□ 1.14
HADHAP40939 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
HADHAP40939 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HADHAP40939 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HADHAP40939 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.19■■□□□ 1.14
HADHAP40939 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
HADHAP40939 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.19■■□□□ 1.14
HADHAP40939 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms