Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RXRBP28702 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RXRBP28702 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
RXRBP28702 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC29.56■■■□□ 2.32
RXRBP28702 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC29.55■■■□□ 2.32
RXRBP28702 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC29.55■■■□□ 2.32
RXRBP28702 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC29.55■■■□□ 2.32
RXRBP28702 AC008550.1-201ENST00000511500 884 ntBASIC29.55■■■□□ 2.32
RXRBP28702 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC29.55■■■□□ 2.32
RXRBP28702 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC29.55■■■□□ 2.32
RXRBP28702 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
RXRBP28702 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
RXRBP28702 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC29.54■■■□□ 2.32
RXRBP28702 AC006058.3-201ENST00000606217 1069 ntBASIC29.54■■■□□ 2.32
RXRBP28702 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC29.54■■■□□ 2.32
RXRBP28702 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
RXRBP28702 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC29.53■■■□□ 2.32
RXRBP28702 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC29.53■■■□□ 2.32
RXRBP28702 MIPEPP3-201ENST00000412105 444 ntBASIC29.53■■■□□ 2.32
RXRBP28702 CNN2P6-201ENST00000439038 900 ntBASIC29.53■■■□□ 2.32
RXRBP28702 AC128676.1-201ENST00000454392 318 ntBASIC29.53■■■□□ 2.32
RXRBP28702 USP36-216ENST00000589424 970 ntTSL 5 BASIC29.53■■■□□ 2.32
RXRBP28702 AC104187.1-201ENST00000607510 612 ntBASIC29.53■■■□□ 2.32
RXRBP28702 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
RXRBP28702 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
RXRBP28702 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
RXRBP28702 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC29.52■■■□□ 2.32
RXRBP28702 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
RXRBP28702 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
RXRBP28702 AC211429.1-201ENST00000415277 523 ntBASIC29.52■■■□□ 2.32
RXRBP28702 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC29.52■■■□□ 2.32
RXRBP28702 BRI3-207ENST00000539286 699 ntTSL 2 BASIC29.52■■■□□ 2.32
RXRBP28702 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
RXRBP28702 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
RXRBP28702 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RXRBP28702 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
RXRBP28702 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RXRBP28702 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RXRBP28702 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC29.51■■■□□ 2.31
RXRBP28702 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC29.51■■■□□ 2.31
RXRBP28702 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC29.51■■■□□ 2.31
RXRBP28702 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RXRBP28702 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
RXRBP28702 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC29.51■■■□□ 2.31
RXRBP28702 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.5■■■□□ 2.31
RXRBP28702 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC29.5■■■□□ 2.31
RXRBP28702 ABCB10P1-201ENST00000614297 2181 ntBASIC29.5■■■□□ 2.31
RXRBP28702 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
RXRBP28702 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
RXRBP28702 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
RXRBP28702 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC29.5■■■□□ 2.31
RXRBP28702 APTR-203ENST00000430801 583 ntTSL 5 BASIC29.5■■■□□ 2.31
RXRBP28702 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
RXRBP28702 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
RXRBP28702 MMD2-204ENST00000612910 778 ntTSL 5 BASIC29.5■■■□□ 2.31
RXRBP28702 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
RXRBP28702 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RXRBP28702 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC29.5■■■□□ 2.31
RXRBP28702 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
RXRBP28702 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RXRBP28702 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC29.5■■■□□ 2.31
RXRBP28702 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
RXRBP28702 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC29.49■■■□□ 2.31
RXRBP28702 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC29.49■■■□□ 2.31
RXRBP28702 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC29.49■■■□□ 2.31
RXRBP28702 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC29.49■■■□□ 2.31
RXRBP28702 MYCNOS-205ENST00000641950 531 ntBASIC29.49■■■□□ 2.31
RXRBP28702 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
RXRBP28702 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC29.49■■■□□ 2.31
RXRBP28702 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC29.49■■■□□ 2.31
RXRBP28702 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
RXRBP28702 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC29.48■■■□□ 2.31
RXRBP28702 GXYLT1P3-201ENST00000453058 1193 ntBASIC29.48■■■□□ 2.31
RXRBP28702 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC29.48■■■□□ 2.31
RXRBP28702 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC29.48■■■□□ 2.31
RXRBP28702 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC29.48■■■□□ 2.31
RXRBP28702 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC29.47■■■□□ 2.31
RXRBP28702 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC29.47■■■□□ 2.31
RXRBP28702 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC29.47■■■□□ 2.31
RXRBP28702 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
RXRBP28702 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC29.47■■■□□ 2.31
RXRBP28702 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC29.47■■■□□ 2.31
RXRBP28702 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC29.47■■■□□ 2.31
RXRBP28702 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC29.47■■■□□ 2.31
RXRBP28702 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
RXRBP28702 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC29.47■■■□□ 2.31
RXRBP28702 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC29.46■■■□□ 2.31
RXRBP28702 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
RXRBP28702 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC29.46■■■□□ 2.31
RXRBP28702 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.31
RXRBP28702 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
RXRBP28702 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC29.45■■■□□ 2.31
RXRBP28702 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC29.45■■■□□ 2.31
RXRBP28702 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
RXRBP28702 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC29.45■■■□□ 2.31
RXRBP28702 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC29.45■■■□□ 2.31
RXRBP28702 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC29.45■■■□□ 2.31
RXRBP28702 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
RXRBP28702 MMAB-206ENST00000540016 945 ntTSL 3 BASIC29.44■■■□□ 2.3
RXRBP28702 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC29.44■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms