Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 STARD3NL-203ENST00000429075 857 ntTSL 511.24□□□□□ -0.613e-9■■■■□ 19.9
YBX3P16989 STARD3NL-205ENST00000440144 784 ntTSL 37.82□□□□□ -1.163e-9■■■■□ 19.9
YBX3P16989 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.62■□□□□ 0.898e-10■■■■□ 19.9
YBX3P16989 MATR3-233ENST00000504203 2243 ntTSL 2 BASIC13.67□□□□□ -0.228e-10■■■■□ 19.9
YBX3P16989 MATR3-237ENST00000509990 3249 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.338e-10■■■■□ 19.9
YBX3P16989 MATR3-210ENST00000504643 2560 ntTSL 210.61□□□□□ -0.718e-10■■■■□ 19.9
YBX3P16989 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC8.43□□□□□ -1.068e-10■■■■□ 19.9
YBX3P16989 MATR3-218ENST00000511978 573 ntTSL 37.3□□□□□ -1.248e-10■■■■□ 19.9
YBX3P16989 MATR3-226ENST00000515833 1001 ntTSL 57□□□□□ -1.298e-10■■■■□ 19.9
YBX3P16989 MATR3-216ENST00000511249 447 ntTSL 46.98□□□□□ -1.298e-10■■■■□ 19.9
YBX3P16989 MATR3-202ENST00000502422 2250 ntTSL 1 (best)6.18□□□□□ -1.428e-10■■■■□ 19.9
YBX3P16989 MATR3-214ENST00000509918 377 ntTSL 45.04□□□□□ -1.68e-10■■■■□ 19.9
YBX3P16989 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.99e-7■■■■□ 19.9
YBX3P16989 MRPL15-203ENST00000522521 853 ntTSL 58.08□□□□□ -1.129e-7■■■■□ 19.9
YBX3P16989 HECTD1-214ENST00000556281 684 ntTSL 1 (best)7.37□□□□□ -1.234e-10■■■■□ 19.9
YBX3P16989 HECTD1-210ENST00000555843 4281 ntTSL 24.9□□□□□ -1.624e-10■■■■□ 19.9
YBX3P16989 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.733e-7■■■■□ 19.9
YBX3P16989 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.41■■□□□ 1.343e-7■■■■□ 19.9
YBX3P16989 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC22.02■■□□□ 1.123e-7■■■■□ 19.9
YBX3P16989 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.483e-7■■■■□ 19.9
YBX3P16989 ARHGAP35-205ENST00000599284 931 ntTSL 218.8■□□□□ 0.61e-9■■■■□ 19.9
YBX3P16989 ARHGAP35-202ENST00000595822 2977 ntTSL 212.66□□□□□ -0.381e-9■■■■□ 19.9
YBX3P16989 AFAP1-AS1-201ENST00000608442 6795 ntTSL 1 (best) BASIC9.29□□□□□ -0.921e-6■■■■□ 19.9
YBX3P16989 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.321e-7■■■■□ 19.9
YBX3P16989 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.231e-7■■■■□ 19.9
YBX3P16989 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.391e-7■■■■□ 19.9
YBX3P16989 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC12.38□□□□□ -0.431e-7■■■■□ 19.9
YBX3P16989 WNK1-204ENST00000530271 11804 ntTSL 1 (best) BASIC10.98□□□□□ -0.651e-7■■■■□ 19.9
YBX3P16989 ANGPT1-201ENST00000297450 4353 ntAPPRIS ALT1 TSL 1 (best)3.65□□□□□ -1.836e-7■■■■□ 19.8
YBX3P16989 ANGPT1-202ENST00000517746 4322 ntAPPRIS P3 TSL 1 (best)3.22□□□□□ -1.896e-7■■■■□ 19.8
YBX3P16989 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC26.31■■□□□ 1.81e-6■■■■□ 19.8
YBX3P16989 NDUFAF3-205ENST00000480392 769 ntTSL 225.81■■□□□ 1.721e-6■■■■□ 19.8
YBX3P16989 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.141e-6■■■■□ 19.8
YBX3P16989 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.27■■□□□ 11e-6■■■■□ 19.8
YBX3P16989 NDUFAF3-206ENST00000496152 826 ntTSL 217.22■□□□□ 0.351e-6■■■■□ 19.8
YBX3P16989 NDUFAF3-201ENST00000326912 705 ntTSL 2 BASIC15.62■□□□□ 0.091e-6■■■■□ 19.8
YBX3P16989 CSNK1G2-202ENST00000585957 300 ntTSL 510.53□□□□□ -0.722e-7■■■■□ 19.8
YBX3P16989 DDHD2-214ENST00000528358 600 ntTSL 426.14■■□□□ 1.782e-8■■■■□ 19.8
YBX3P16989 DDHD2-203ENST00000519857 1668 ntTSL 225.4■■□□□ 1.662e-8■■■■□ 19.8
YBX3P16989 DDHD2-209ENST00000526237 697 ntTSL 523.84■■□□□ 1.412e-8■■■■□ 19.8
YBX3P16989 DDHD2-210ENST00000526370 575 ntTSL 423.65■■□□□ 1.382e-8■■■■□ 19.8
YBX3P16989 DDHD2-224ENST00000533100 683 ntTSL 521.73■■□□□ 1.072e-8■■■■□ 19.8
YBX3P16989 DDHD2-211ENST00000527415 1124 ntTSL 511.15□□□□□ -0.622e-8■■■■□ 19.8
YBX3P16989 DDHD2-212ENST00000527834 568 ntTSL 411□□□□□ -0.652e-8■■■■□ 19.8
YBX3P16989 DDHD2-218ENST00000529642 358 ntTSL 511□□□□□ -0.652e-8■■■■□ 19.8
YBX3P16989 DDHD2-223ENST00000532222 696 ntTSL 510.05□□□□□ -0.82e-8■■■■□ 19.8
YBX3P16989 Y_RNA.194-201ENST00000363985 102 ntBASIC7.48□□□□□ -1.212e-39■■■■□ 19.8
YBX3P16989 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.169e-7■■■■□ 19.8
YBX3P16989 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.429e-7■■■■□ 19.8
YBX3P16989 PAPOLA-208ENST00000554135 735 ntTSL 38.53□□□□□ -1.045e-7■■■■□ 19.8
YBX3P16989 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.112e-6■■■■□ 19.8
YBX3P16989 CCNB1IP1-206ENST00000437553 1686 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.034e-7■■■■□ 19.8
YBX3P16989 CCNB1IP1-205ENST00000398169 1631 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.344e-7■■■■□ 19.8
YBX3P16989 CCNB1IP1-204ENST00000398163 1604 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.514e-7■■■■□ 19.8
YBX3P16989 CCNB1IP1-203ENST00000398160 1613 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.524e-7■■■■□ 19.8
YBX3P16989 CCNB1IP1-201ENST00000353689 1305 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.714e-7■■■■□ 19.8
YBX3P16989 CCNB1IP1-202ENST00000358932 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.744e-7■■■■□ 19.8
YBX3P16989 CCNB1IP1-214ENST00000556854 1294 ntTSL 59.52□□□□□ -0.894e-7■■■■□ 19.8
YBX3P16989 CCNB1IP1-210ENST00000554184 513 ntTSL 35.67□□□□□ -1.54e-7■■■■□ 19.8
YBX3P16989 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -04e-6■■■■□ 19.8
YBX3P16989 SRD5A3-202ENST00000505210 768 ntTSL 38.99□□□□□ -0.974e-6■■■■□ 19.8
YBX3P16989 SRD5A3-203ENST00000514398 715 ntTSL 36.2□□□□□ -1.424e-6■■■■□ 19.8
YBX3P16989 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.84■■■□□ 2.695e-7■■■■□ 19.8
YBX3P16989 GUSB-203ENST00000430730 1859 ntTSL 528.54■■■□□ 2.165e-7■■■■□ 19.8
YBX3P16989 GUSB-205ENST00000447929 1983 ntTSL 327.45■■□□□ 1.985e-7■■■■□ 19.8
YBX3P16989 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.15e-7■■■■□ 19.8
YBX3P16989 STAT3-205ENST00000462286 1982 nt15.13■□□□□ 0.017e-8■■■■□ 19.8
YBX3P16989 PPP1CA-206ENST00000529724 572 ntTSL 215.83■□□□□ 0.129e-9■■■■□ 19.8
YBX3P16989 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.16e-7■■■■□ 19.8
YBX3P16989 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.68■□□□□ 0.16e-7■■■■□ 19.8
YBX3P16989 XPO7-204ENST00000518017 939 ntTSL 1 (best)7.16□□□□□ -1.266e-9■■■■□ 19.8
YBX3P16989 XPO7-208ENST00000521303 569 ntTSL 55.94□□□□□ -1.466e-9■■■■□ 19.8
YBX3P16989 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC23.57■■□□□ 1.365e-8■■■■□ 19.8
YBX3P16989 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.155e-8■■■■□ 19.8
YBX3P16989 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC22.24■■□□□ 1.155e-8■■■■□ 19.8
YBX3P16989 AC008038.1-201ENST00000634247 1314 ntBASIC16.65■□□□□ 0.266e-7■■■■□ 19.8
YBX3P16989 CHCHD3-205ENST00000481152 1367 ntTSL 26.8□□□□□ -1.326e-7■■■■□ 19.8
YBX3P16989 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.444e-9■■■■□ 19.7
YBX3P16989 USP7-208ENST00000563961 4533 ntTSL 514.63□□□□□ -0.074e-9■■■■□ 19.7
YBX3P16989 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.83□□□□□ -1.324e-9■■■■□ 19.7
YBX3P16989 USP7-210ENST00000565455 3554 ntTSL 25.81□□□□□ -1.484e-9■■■■□ 19.7
YBX3P16989 ATP2A2-203ENST00000377685 5702 ntTSL 522.03■■□□□ 1.126e-10■■■■□ 19.7
YBX3P16989 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.546e-10■■■■□ 19.7
YBX3P16989 SERPINF1-211ENST00000576406 795 ntTSL 314.97□□□□□ -0.014e-7■■■■□ 19.7
YBX3P16989 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.599e-9■■■■□ 19.7
YBX3P16989 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.029e-9■■■■□ 19.7
YBX3P16989 NKIRAS2-203ENST00000393879 4213 ntTSL 1 (best)10.18□□□□□ -0.789e-9■■■■□ 19.7
YBX3P16989 GTF2F1-205ENST00000595047 1382 ntTSL 522.5■■□□□ 1.193e-13■■■■□ 19.7
YBX3P16989 GTF2F1-206ENST00000598607 568 ntTSL 418.99■□□□□ 0.633e-13■■■■□ 19.7
YBX3P16989 GTF2F1-202ENST00000593678 1705 ntTSL 217.21■□□□□ 0.353e-13■■■■□ 19.7
YBX3P16989 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.113e-13■■■■□ 19.7
YBX3P16989 COPRS-205ENST00000579984 422 ntTSL 329.29■■■□□ 2.283e-6■■■■□ 19.7
YBX3P16989 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC24.64■■□□□ 1.533e-6■■■■□ 19.7
YBX3P16989 COPRS-204ENST00000579741 471 ntTSL 324.55■■□□□ 1.523e-6■■■■□ 19.7
YBX3P16989 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.413e-6■■■■□ 19.7
YBX3P16989 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC22.22■■□□□ 1.153e-6■■■■□ 19.7
YBX3P16989 GTPBP8-201ENST00000295864 679 ntTSL 1 (best)22.02■■□□□ 1.123e-6■■■■□ 19.7
YBX3P16989 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.063e-6■■■■□ 19.7
YBX3P16989 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.66■■□□□ 1.063e-6■■■■□ 19.7
YBX3P16989 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.66■■□□□ 1.063e-6■■■■□ 19.7
Retrieved 100 of 29,075 protein–RNA pairs in 512.5 ms