Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
PTCD1O75127 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
PTCD1O75127 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
PTCD1O75127 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
PTCD1O75127 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.59■■■□□ 2.17
PTCD1O75127 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
PTCD1O75127 EED-207ENST00000528180 1745 ntTSL 5 BASIC28.59■■■□□ 2.17
PTCD1O75127 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
PTCD1O75127 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC28.59■■■□□ 2.17
PTCD1O75127 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC28.59■■■□□ 2.17
PTCD1O75127 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
PTCD1O75127 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
PTCD1O75127 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.58■■■□□ 2.17
PTCD1O75127 DENND3-207ENST00000518347 850 ntTSL 2 BASIC28.58■■■□□ 2.17
PTCD1O75127 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
PTCD1O75127 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
PTCD1O75127 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
PTCD1O75127 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.57■■■□□ 2.16
PTCD1O75127 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
PTCD1O75127 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
PTCD1O75127 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC28.57■■■□□ 2.16
PTCD1O75127 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
PTCD1O75127 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
PTCD1O75127 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
PTCD1O75127 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC28.56■■■□□ 2.16
PTCD1O75127 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC28.56■■■□□ 2.16
PTCD1O75127 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.56■■■□□ 2.16
PTCD1O75127 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC28.56■■■□□ 2.16
PTCD1O75127 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.56■■■□□ 2.16
PTCD1O75127 AC004687.1-201ENST00000579003 1625 ntBASIC28.56■■■□□ 2.16
PTCD1O75127 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC28.56■■■□□ 2.16
PTCD1O75127 TPRG1LP1-201ENST00000598702 760 ntBASIC28.56■■■□□ 2.16
PTCD1O75127 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.56■■■□□ 2.16
PTCD1O75127 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC28.56■■■□□ 2.16
PTCD1O75127 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
PTCD1O75127 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
PTCD1O75127 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
PTCD1O75127 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
PTCD1O75127 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC28.55■■■□□ 2.16
PTCD1O75127 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
PTCD1O75127 HLA-L-209ENST00000420110 1011 ntBASIC28.54■■■□□ 2.16
PTCD1O75127 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.54■■■□□ 2.16
PTCD1O75127 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC28.54■■■□□ 2.16
PTCD1O75127 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.54■■■□□ 2.16
PTCD1O75127 AC080038.1-201ENST00000611274 1154 ntBASIC28.54■■■□□ 2.16
PTCD1O75127 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.54■■■□□ 2.16
PTCD1O75127 AC079630.1-202ENST00000618127 1840 ntBASIC28.54■■■□□ 2.16
PTCD1O75127 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
PTCD1O75127 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
PTCD1O75127 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PTCD1O75127 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
PTCD1O75127 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PTCD1O75127 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.53■■■□□ 2.16
PTCD1O75127 AC006015.1-201ENST00000429970 570 ntBASIC28.53■■■□□ 2.16
PTCD1O75127 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC28.53■■■□□ 2.16
PTCD1O75127 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.53■■■□□ 2.16
PTCD1O75127 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.53■■■□□ 2.16
PTCD1O75127 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC28.53■■■□□ 2.16
PTCD1O75127 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
PTCD1O75127 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
PTCD1O75127 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PTCD1O75127 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PTCD1O75127 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PTCD1O75127 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PTCD1O75127 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC28.52■■■□□ 2.16
PTCD1O75127 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC28.52■■■□□ 2.16
PTCD1O75127 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PTCD1O75127 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC28.51■■■□□ 2.16
PTCD1O75127 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
PTCD1O75127 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC28.51■■■□□ 2.15
PTCD1O75127 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
PTCD1O75127 AC137761.2-201ENST00000561729 223 ntBASIC28.51■■■□□ 2.15
PTCD1O75127 AC145350.3-201ENST00000569033 163 ntBASIC28.51■■■□□ 2.15
PTCD1O75127 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.51■■■□□ 2.15
PTCD1O75127 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
PTCD1O75127 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.51■■■□□ 2.15
PTCD1O75127 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
PTCD1O75127 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC28.51■■■□□ 2.15
PTCD1O75127 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
PTCD1O75127 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
PTCD1O75127 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
PTCD1O75127 COX20-201ENST00000366528 568 ntTSL 2 BASIC28.5■■■□□ 2.15
PTCD1O75127 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC28.5■■■□□ 2.15
PTCD1O75127 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC28.5■■■□□ 2.15
PTCD1O75127 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
PTCD1O75127 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.5■■■□□ 2.15
PTCD1O75127 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC28.5■■■□□ 2.15
PTCD1O75127 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
PTCD1O75127 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
PTCD1O75127 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
PTCD1O75127 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC28.5■■■□□ 2.15
PTCD1O75127 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
PTCD1O75127 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC28.49■■■□□ 2.15
PTCD1O75127 AP004607.4-201ENST00000530158 1459 ntBASIC28.49■■■□□ 2.15
PTCD1O75127 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
PTCD1O75127 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
PTCD1O75127 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC28.49■■■□□ 2.15
PTCD1O75127 AC004854.2-201ENST00000608450 1441 ntBASIC28.49■■■□□ 2.15
PTCD1O75127 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
PTCD1O75127 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms