Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.86■■■□□ 2.05
NPHP1O15259 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
NPHP1O15259 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC27.86■■■□□ 2.05
NPHP1O15259 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC27.86■■■□□ 2.05
NPHP1O15259 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
NPHP1O15259 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC27.85■■■□□ 2.05
NPHP1O15259 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
NPHP1O15259 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC27.85■■■□□ 2.05
NPHP1O15259 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC27.85■■■□□ 2.05
NPHP1O15259 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC27.85■■■□□ 2.05
NPHP1O15259 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC27.85■■■□□ 2.05
NPHP1O15259 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC27.85■■■□□ 2.05
NPHP1O15259 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC27.85■■■□□ 2.05
NPHP1O15259 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC27.84■■■□□ 2.05
NPHP1O15259 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
NPHP1O15259 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC27.84■■■□□ 2.05
NPHP1O15259 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
NPHP1O15259 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC27.84■■■□□ 2.05
NPHP1O15259 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
NPHP1O15259 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
NPHP1O15259 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.84■■■□□ 2.05
NPHP1O15259 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC27.84■■■□□ 2.05
NPHP1O15259 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.84■■■□□ 2.05
NPHP1O15259 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC27.84■■■□□ 2.05
NPHP1O15259 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
NPHP1O15259 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
NPHP1O15259 COX20-201ENST00000366528 568 ntTSL 2 BASIC27.83■■■□□ 2.05
NPHP1O15259 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
NPHP1O15259 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC27.83■■■□□ 2.05
NPHP1O15259 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC27.83■■■□□ 2.05
NPHP1O15259 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC27.83■■■□□ 2.04
NPHP1O15259 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.82■■■□□ 2.04
NPHP1O15259 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
NPHP1O15259 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
NPHP1O15259 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC27.82■■■□□ 2.04
NPHP1O15259 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
NPHP1O15259 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC27.82■■■□□ 2.04
NPHP1O15259 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.82■■■□□ 2.04
NPHP1O15259 GXYLT1P5-201ENST00000614548 1189 ntBASIC27.82■■■□□ 2.04
NPHP1O15259 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
NPHP1O15259 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
NPHP1O15259 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC27.82■■■□□ 2.04
NPHP1O15259 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
NPHP1O15259 EI24-213ENST00000618552 1747 ntTSL 5 BASIC27.81■■■□□ 2.04
NPHP1O15259 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.04
NPHP1O15259 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC27.81■■■□□ 2.04
NPHP1O15259 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
NPHP1O15259 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
NPHP1O15259 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
NPHP1O15259 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
NPHP1O15259 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
NPHP1O15259 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
NPHP1O15259 DBI-210ENST00000542275 757 ntTSL 5 BASIC27.8■■■□□ 2.04
NPHP1O15259 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC27.8■■■□□ 2.04
NPHP1O15259 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
NPHP1O15259 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
NPHP1O15259 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
NPHP1O15259 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP1O15259 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.79■■■□□ 2.04
NPHP1O15259 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP1O15259 AC006015.1-201ENST00000429970 570 ntBASIC27.79■■■□□ 2.04
NPHP1O15259 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC27.79■■■□□ 2.04
NPHP1O15259 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC27.79■■■□□ 2.04
NPHP1O15259 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC27.79■■■□□ 2.04
NPHP1O15259 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC27.79■■■□□ 2.04
NPHP1O15259 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP1O15259 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP1O15259 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP1O15259 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP1O15259 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP1O15259 SHD-204ENST00000599689 1729 ntTSL 5 BASIC27.78■■■□□ 2.04
NPHP1O15259 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP1O15259 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP1O15259 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP1O15259 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC27.77■■■□□ 2.04
NPHP1O15259 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP1O15259 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP1O15259 AC073111.5-205ENST00000641717 521 ntBASIC27.77■■■□□ 2.04
NPHP1O15259 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC27.77■■■□□ 2.04
NPHP1O15259 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC27.77■■■□□ 2.04
NPHP1O15259 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
NPHP1O15259 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
NPHP1O15259 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
NPHP1O15259 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC27.76■■■□□ 2.04
NPHP1O15259 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC27.76■■■□□ 2.03
NPHP1O15259 PKM-204ENST00000449901 2526 ntTSL 2 BASIC27.76■■■□□ 2.03
NPHP1O15259 STX7-201ENST00000367937 1090 ntTSL 5 BASIC27.76■■■□□ 2.03
NPHP1O15259 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC27.76■■■□□ 2.03
NPHP1O15259 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC27.76■■■□□ 2.03
NPHP1O15259 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC27.76■■■□□ 2.03
NPHP1O15259 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC27.76■■■□□ 2.03
NPHP1O15259 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP1O15259 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
NPHP1O15259 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
NPHP1O15259 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC27.75■■■□□ 2.03
NPHP1O15259 KRT18P61-201ENST00000585825 1298 ntBASIC27.75■■■□□ 2.03
NPHP1O15259 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP1O15259 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP1O15259 GAS2L1P2-201ENST00000436355 1356 ntBASIC27.74■■■□□ 2.03
NPHP1O15259 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms