Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.57■■□□□ 1.2
CBX4O00257 AC010525.1-201ENST00000585559 441 ntBASIC22.57■■□□□ 1.2
CBX4O00257 DUSP8P3-201ENST00000399571 1760 ntBASIC22.57■■□□□ 1.2
CBX4O00257 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CBX4O00257 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CBX4O00257 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CBX4O00257 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CBX4O00257 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.57■■□□□ 1.2
CBX4O00257 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CBX4O00257 RASA4CP-201ENST00000424092 1398 ntBASIC22.56■■□□□ 1.2
CBX4O00257 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CBX4O00257 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CBX4O00257 CA15P2-201ENST00000611168 834 ntBASIC22.56■■□□□ 1.2
CBX4O00257 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CBX4O00257 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CBX4O00257 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CBX4O00257 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.56■■□□□ 1.2
CBX4O00257 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CBX4O00257 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.55■■□□□ 1.2
CBX4O00257 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 OR2I1P-207ENST00000453522 948 ntBASIC22.55■■□□□ 1.2
CBX4O00257 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.55■■□□□ 1.2
CBX4O00257 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
CBX4O00257 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.55■■□□□ 1.2
CBX4O00257 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CBX4O00257 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CBX4O00257 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CBX4O00257 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CBX4O00257 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
CBX4O00257 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.54■■□□□ 1.2
CBX4O00257 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.54■■□□□ 1.2
CBX4O00257 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.54■■□□□ 1.2
CBX4O00257 AC126544.1-201ENST00000580842 1059 ntBASIC22.54■■□□□ 1.2
CBX4O00257 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CBX4O00257 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
CBX4O00257 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CBX4O00257 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
CBX4O00257 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CBX4O00257 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CBX4O00257 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CBX4O00257 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.52■■□□□ 1.2
CBX4O00257 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CBX4O00257 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.52■■□□□ 1.2
CBX4O00257 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CBX4O00257 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CBX4O00257 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.52■■□□□ 1.2
CBX4O00257 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CBX4O00257 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.52■■□□□ 1.2
CBX4O00257 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CBX4O00257 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.52■■□□□ 1.2
CBX4O00257 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CBX4O00257 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CBX4O00257 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CBX4O00257 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
CBX4O00257 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CBX4O00257 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CBX4O00257 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CBX4O00257 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.51■■□□□ 1.19
CBX4O00257 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.51■■□□□ 1.19
CBX4O00257 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.51■■□□□ 1.19
CBX4O00257 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.51■■□□□ 1.19
CBX4O00257 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.51■■□□□ 1.19
CBX4O00257 DUSP8P5-201ENST00000422884 1815 ntBASIC22.51■■□□□ 1.19
CBX4O00257 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CBX4O00257 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CBX4O00257 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CBX4O00257 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CBX4O00257 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CBX4O00257 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.5■■□□□ 1.19
CBX4O00257 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CBX4O00257 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.5■■□□□ 1.19
CBX4O00257 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.5■■□□□ 1.19
CBX4O00257 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.5■■□□□ 1.19
CBX4O00257 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CBX4O00257 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
CBX4O00257 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CBX4O00257 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CBX4O00257 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CBX4O00257 MIR5787-201ENST00000611784 55 ntBASIC22.49■■□□□ 1.19
CBX4O00257 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CBX4O00257 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CBX4O00257 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
CBX4O00257 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
CBX4O00257 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CBX4O00257 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
CBX4O00257 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CBX4O00257 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.48■■□□□ 1.19
CBX4O00257 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CBX4O00257 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
CBX4O00257 AC104564.3-201ENST00000582367 638 ntBASIC22.48■■□□□ 1.19
CBX4O00257 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
CBX4O00257 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
CBX4O00257 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms