Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CHKB-CPT1BH3BT56 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CHKB-CPT1BH3BT56 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 AC141586.4-201ENST00000624558 1573 ntBASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 AC120498.9-201ENST00000339021 3867 ntBASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 OVCH1-AS1-204ENST00000641955 5529 ntBASIC12.36□□□□□ -0.43
CHKB-CPT1BH3BT56 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 EBPL-203ENST00000378270 579 ntTSL 2 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 LINC00526-201ENST00000581067 1875 ntBASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 RARG-204ENST00000543726 1779 ntTSL 2 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CHKB-CPT1BH3BT56 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CHKB-CPT1BH3BT56 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms