Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 MTDHP2-201ENST00000601468 714 ntBASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 Z92544.1-202ENST00000571933 1220 ntBASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 MIR4787-201ENST00000607364 84 ntBASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPSF4LA6NMK7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CPSF4LA6NMK7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 AC239859.2-201ENST00000444165 318 ntBASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 FP325331.1-202ENST00000623531 1380 ntBASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPSF4LA6NMK7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 AC080038.3-201ENST00000623346 1952 ntBASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 AC087742.1-201ENST00000575880 1738 ntBASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.28■□□□□ 0.84
CPSF4LA6NMK7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 AC139530.1-201ENST00000575312 1977 ntBASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 TSPY9P-201ENST00000440215 945 ntBASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 TSPY11P-201ENST00000442607 1045 ntBASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CPSF4LA6NMK7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4LA6NMK7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms