Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-2A0A0B4J238 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-2A0A0B4J238 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-2A0A0B4J238 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-2A0A0B4J238 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-2A0A0B4J238 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-2A0A0B4J238 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 MIR4449-201ENST00000578365 66 ntBASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 AC244015.2-201ENST00000616358 1861 ntBASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
TRAV1-2A0A0B4J238 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-2A0A0B4J238 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 AC005229.4-201ENST00000610085 2198 ntBASIC19.15■□□□□ 0.66
TRAV1-2A0A0B4J238 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRAV1-2A0A0B4J238 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV1-2A0A0B4J238 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 AC120024.1-201ENST00000562672 995 ntBASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.13■□□□□ 0.65
TRAV1-2A0A0B4J238 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.12■□□□□ 0.65
TRAV1-2A0A0B4J238 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms