Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-1-201ENST00000616420 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-2-201ENST00000616483 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-4-201ENST00000617390 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-3-201ENST00000622482 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 AC233723.2-201ENST00000623798 2106 ntBASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AL031432.3-201ENST00000607698 485 ntBASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AC144652.1-201ENST00000609974 1624 ntBASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AL356740.2-201ENST00000601559 647 ntBASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 IKBKGP1-201ENST00000612193 1073 ntBASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AC006455.2-201ENST00000429931 906 ntBASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC29.55■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 185.5 ms