Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 ABI1-212ENST00000490841 3188 ntTSL 2 BASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 AC120114.4-201ENST00000623731 2194 ntBASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 EDARADD-204ENST00000637660 2803 ntTSL 5 BASIC12.52□□□□□ -0.41
AMBRA1Q9C0C7 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 SH2D2A-203ENST00000392306 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 TSNAXIP1-201ENST00000388833 2429 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 RNF170-206ENST00000527424 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 GAS8-201ENST00000268699 3185 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 CCDC114-201ENST00000315396 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 PEX1-204ENST00000438045 3329 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 HIST1H2BH-201ENST00000619466 2060 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 CYP4F11-201ENST00000248041 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 RUFY4-202ENST00000374155 2977 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC234782.1-201ENST00000451950 919 ntBASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 BUD31-205ENST00000456893 512 ntTSL 5 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC008723.1-201ENST00000506922 207 ntBASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC087164.2-201ENST00000624514 3130 ntBASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AC090502.4-201ENST00000551714 1386 ntBASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 PITRM1-201ENST00000224949 3450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 ACADL-201ENST00000233710 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AIPL1-201ENST00000250087 2783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 LINC01447-201ENST00000429010 2761 ntTSL 2 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 C3orf56-201ENST00000624688 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 AL031714.1-201ENST00000567829 2926 ntTSL 5 BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 MAN2B1-201ENST00000221363 3170 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
AMBRA1Q9C0C7 OSTM1-AS1-202ENST00000441184 3334 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 TRIM37-202ENST00000393065 3548 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 DPAGT1-201ENST00000354202 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 IGHG2-202ENST00000641095 2594 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 SLC12A6-205ENST00000458406 4425 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 RCBTB2-206ENST00000544904 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 PNPLA8-208ENST00000453144 3366 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 MIR557-201ENST00000385239 98 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 DKKL1P1-201ENST00000400550 698 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AC092573.1-201ENST00000433054 884 ntBASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
AMBRA1Q9C0C7 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms