Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 TBC1D27-202ENST00000424239 1573 ntBASIC12.89□□□□□ -0.35
COL28A1Q2UY09 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 TSN-212ENST00000536142 3328 ntTSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 KRT18P33-201ENST00000398525 1043 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 AC000078.1-201ENST00000420617 682 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 GULOP-201ENST00000454030 748 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 AC233724.9-201ENST00000511694 407 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 RNA5SP288-201ENST00000516075 93 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 HNRNPA1P72-201ENST00000529511 967 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 AC132825.4-202ENST00000578792 434 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 RN7SL455P-201ENST00000580629 282 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 RN7SL202P-201ENST00000584410 262 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC12.88□□□□□ -0.35
COL28A1Q2UY09 COG6-212ENST00000630730 186 ntTSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL28A1Q2UY09 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AL365181.3-201ENST00000605886 3222 ntBASIC12.87□□□□□ -0.35
COL28A1Q2UY09 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms