Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 ANXA4-201ENST00000394295 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLCN1P35523 ARHGEF10-203ENST00000398560 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLCN1P35523 AC093583.1-201ENST00000462083 2383 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 C8B-206ENST00000543257 2382 ntTSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 ENOSF1-203ENST00000383578 4188 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 INAVA-201ENST00000367342 4298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 FP565260.1-201ENST00000617716 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 NAT10-202ENST00000527971 1600 ntTSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 C10orf90-201ENST00000284694 3076 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 ZSCAN30-202ENST00000420878 4323 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.22■□□□□ 0.03
CLCN1P35523 NKAIN1P1-201ENST00000435754 582 ntBASIC15.22■□□□□ 0.03
CLCN1P35523 CT45A11P-201ENST00000448043 1134 ntBASIC15.22■□□□□ 0.03
CLCN1P35523 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.22■□□□□ 0.03
CLCN1P35523 AC104306.2-201ENST00000451877 341 ntBASIC15.22■□□□□ 0.03
CLCN1P35523 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.22■□□□□ 0.03
CLCN1P35523 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.22■□□□□ 0.03
CLCN1P35523 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.22■□□□□ 0.03
CLCN1P35523 MIR3615-201ENST00000581999 87 ntBASIC15.22■□□□□ 0.03
CLCN1P35523 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
CLCN1P35523 AL157813.1-201ENST00000612996 587 ntBASIC15.22■□□□□ 0.03
CLCN1P35523 AL008638.5-201ENST00000623814 1298 ntBASIC15.22■□□□□ 0.03
CLCN1P35523 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 RAI2-202ENST00000360011 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 SRP68-212ENST00000602720 2037 ntTSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 MSH6-215ENST00000622629 4324 ntTSL 5 BASIC15.22■□□□□ 0.03
CLCN1P35523 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CLCN1P35523 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 HERC2P3-208ENST00000430598 4279 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLCN1P35523 ECHDC1-209ENST00000454591 1515 ntTSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 SNU13-203ENST00000401959 1670 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLCN1P35523 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.22■□□□□ 0.03
CLCN1P35523 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 WDR37-201ENST00000263150 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 NFXL1-201ENST00000329043 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 SNX10-201ENST00000338523 2546 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 CNGA3-203ENST00000393504 3841 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
CLCN1P35523 ARL4A-203ENST00000396663 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC15.21■□□□□ 0.03
CLCN1P35523 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 AC092802.1-201ENST00000421762 2447 ntTSL 2 BASIC15.21■□□□□ 0.03
CLCN1P35523 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 AL392088.1-201ENST00000428364 670 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC15.21■□□□□ 0.03
CLCN1P35523 ITGB5-AS1-201ENST00000495917 460 ntTSL 3 BASIC15.21■□□□□ 0.03
CLCN1P35523 MARK2P5-201ENST00000507649 634 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.21■□□□□ 0.03
CLCN1P35523 HMGB1P8-201ENST00000558211 949 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 AL359881.2-201ENST00000602973 570 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC15.21■□□□□ 0.03
CLCN1P35523 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.21■□□□□ 0.03
CLCN1P35523 AC068338.3-201ENST00000617892 418 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 AL136295.7-201ENST00000619226 1200 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 MTRF1L-203ENST00000367233 3676 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 AL590428.1-201ENST00000428865 1973 ntTSL 2 BASIC15.21■□□□□ 0.03
CLCN1P35523 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 BANK1-201ENST00000322953 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 HEXIM1-201ENST00000332499 3600 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CLCN1P35523 LINC01254-201ENST00000566225 2908 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 SPAG5-201ENST00000321765 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLCN1P35523 IMPDH1P8-201ENST00000413639 1525 ntBASIC15.21■□□□□ 0.03
CLCN1P35523 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.21■□□□□ 0.03
CLCN1P35523 NTRK3-204ENST00000360948 3004 ntTSL 5 BASIC15.21■□□□□ 0.02
CLCN1P35523 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms