RNA–Protein interactions for RNA: ENST00000566225.1

LINC01254-201, Transcript of long intergenic non-protein coding RNA 1254, humanhuman

BASIC

Gene LINC01254, Length 2,908 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01254-201ENST00000566225 NISCHQ9Y2I1 1504 aa23.15■■□□□ 1.3
LINC01254-201ENST00000566225 SHROOM4Q9ULL8 1493 aa20.58■□□□□ 0.89
LINC01254-201ENST00000566225 SUPT5HO00267 1087 aaKnown RBP20.44■□□□□ 0.86
LINC01254-201ENST00000566225 HRCP23327 699 aa20.16■□□□□ 0.82
LINC01254-201ENST00000566225 PCGF6Q9BYE7 350 aa19.98■□□□□ 0.79
LINC01254-201ENST00000566225 MYO15BQ96JP2 1530 aa19.93■□□□□ 0.78
LINC01254-201ENST00000566225 CHIC1Q5VXU3 224 aa19.92■□□□□ 0.78
LINC01254-201ENST00000566225 PPARGC1BQ86YN6 1023 aaKnown RBP19.88■□□□□ 0.77
LINC01254-201ENST00000566225 DCAF8L2P0C7V8 631 aa19.65■□□□□ 0.74
LINC01254-201ENST00000566225 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.73
LINC01254-201ENST00000566225 LOC105371045A0A1W2PR82 267 aa19.53■□□□□ 0.72
LINC01254-201ENST00000566225 DCAF1Q9Y4B6 1507 aa19.36■□□□□ 0.69
LINC01254-201ENST00000566225 TRIM26Q12899 539 aaPredicted RBP19.3■□□□□ 0.68
LINC01254-201ENST00000566225 CCDC180Q9P1Z9 1646 aa19.17■□□□□ 0.66
LINC01254-201ENST00000566225 ZEB1P37275 1124 aaPredicted RBP19.02■□□□□ 0.64
LINC01254-201ENST00000566225 PELP1Q8IZL8 1130 aaKnown RBP19.01■□□□□ 0.63
LINC01254-201ENST00000566225 SCAF1Q9H7N4 1312 aaKnown RBP18.98■□□□□ 0.63
LINC01254-201ENST00000566225 FAM9AQ8IZU1 332 aaPredicted RBP18.94■□□□□ 0.62
LINC01254-201ENST00000566225 EHMT2Q96KQ7 1210 aa18.94■□□□□ 0.62
LINC01254-201ENST00000566225 TRIM41Q8WV44 630 aa18.87■□□□□ 0.61
LINC01254-201ENST00000566225 RSF1Q96T23 1441 aaPredicted RBP18.63■□□□□ 0.57
LINC01254-201ENST00000566225 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.6■□□□□ 0.57
LINC01254-201ENST00000566225 ABCC9O60706 1549 aa18.59■□□□□ 0.57
LINC01254-201ENST00000566225 NEUROD1Q13562 356 aa18.57■□□□□ 0.56
LINC01254-201ENST00000566225 ACIN1Q9UKV3 1341 aaKnown RBP18.57■□□□□ 0.56
LINC01254-201ENST00000566225 CCER1Q8TC90 406 aaPredicted RBP18.55■□□□□ 0.56
LINC01254-201ENST00000566225 RB1CC1Q8TDY2 1594 aa18.48■□□□□ 0.55
LINC01254-201ENST00000566225 GTF3C3Q9Y5Q9 886 aa18.46■□□□□ 0.55
LINC01254-201ENST00000566225 SCRIBQ14160 1630 aa18.43■□□□□ 0.54
LINC01254-201ENST00000566225 TTBK1Q5TCY1 1321 aaPredicted RBP18.42■□□□□ 0.54
LINC01254-201ENST00000566225 DIEXFQ68CQ4 756 aaKnown RBP18.42■□□□□ 0.54
LINC01254-201ENST00000566225 CENPBP07199 599 aaPredicted RBP18.37■□□□□ 0.53
LINC01254-201ENST00000566225 CECR2Q9BXF3 1484 aa18.21■□□□□ 0.51
LINC01254-201ENST00000566225 YTHDC1Q96MU7 727 aaKnown RBP18.2■□□□□ 0.5
LINC01254-201ENST00000566225 MYT1Q01538 1121 aa18.14■□□□□ 0.49
LINC01254-201ENST00000566225 MROH2BQ7Z745 1585 aa18.12■□□□□ 0.49
LINC01254-201ENST00000566225 ZNF316A6NFI3 1004 aaPredicted RBP18.09■□□□□ 0.49
LINC01254-201ENST00000566225 WIZO95785 1651 aa18.01■□□□□ 0.47
LINC01254-201ENST00000566225 CEP162Q5TB80 1403 aa17.99■□□□□ 0.47
LINC01254-201ENST00000566225 MIER1Q8N108 512 aa17.99■□□□□ 0.47
LINC01254-201ENST00000566225 UBTFP17480 764 aaKnown RBP17.97■□□□□ 0.47
LINC01254-201ENST00000566225 WRNQ14191 1432 aaPredicted RBP eCLIP17.95■□□□□ 0.46
LINC01254-201ENST00000566225 HNRNPUL2Q1KMD3 747 aaKnown RBP17.93■□□□□ 0.46
LINC01254-201ENST00000566225 CCDC88BA6NC98 1476 aa17.93■□□□□ 0.46
LINC01254-201ENST00000566225 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
LINC01254-201ENST00000566225 SOGA1O94964 1423 aa17.89■□□□□ 0.46
LINC01254-201ENST00000566225 TNIKQ9UKE5 1360 aa17.85■□□□□ 0.45
LINC01254-201ENST00000566225 CSRNP3Q8WYN3 585 aa17.85■□□□□ 0.45
LINC01254-201ENST00000566225 EIF4G1Q04637 1599 aaKnown RBP17.81■□□□□ 0.44
LINC01254-201ENST00000566225 BAZ1AQ9NRL2 1556 aaPredicted RBP17.8■□□□□ 0.44
LINC01254-201ENST00000566225 RUSC2Q8N2Y8 1516 aa17.78■□□□□ 0.44
LINC01254-201ENST00000566225 NACADO15069 1562 aa17.75■□□□□ 0.43
LINC01254-201ENST00000566225 RANGAP1P46060 587 aaPredicted RBP17.7■□□□□ 0.42
LINC01254-201ENST00000566225 GOLGA3Q08378 1498 aa17.65■□□□□ 0.42
LINC01254-201ENST00000566225 EEA1Q15075 1411 aa17.64■□□□□ 0.41
LINC01254-201ENST00000566225 APLP2Q06481 763 aa17.64■□□□□ 0.41
LINC01254-201ENST00000566225 TOP2AP11388 1531 aaKnown RBP17.63■□□□□ 0.41
LINC01254-201ENST00000566225 SMARCA2P51531 1590 aa17.59■□□□□ 0.41
LINC01254-201ENST00000566225 SUPT16HQ9Y5B9 1047 aaKnown RBP17.58■□□□□ 0.41
LINC01254-201ENST00000566225 CLIP1P30622 1438 aa17.56■□□□□ 0.4
LINC01254-201ENST00000566225 SMARCA4P51532 1647 aa17.48■□□□□ 0.39
LINC01254-201ENST00000566225 VPS8Q8N3P4 1428 aa17.48■□□□□ 0.39
LINC01254-201ENST00000566225 CEP164Q9UPV0 1460 aa17.48■□□□□ 0.39
LINC01254-201ENST00000566225 TSHZ2Q9NRE2 1034 aa17.44■□□□□ 0.38
LINC01254-201ENST00000566225 CLSPNQ9HAW4 1339 aa17.42■□□□□ 0.38
LINC01254-201ENST00000566225 DHX57Q6P158 1386 aaKnown RBP17.41■□□□□ 0.38
LINC01254-201ENST00000566225 RAPGEF2Q9Y4G8 1499 aa17.38■□□□□ 0.37
LINC01254-201ENST00000566225 BCANQ96GW7 911 aa17.37■□□□□ 0.37
LINC01254-201ENST00000566225 KCNH8Q96L42 1107 aa17.37■□□□□ 0.37
LINC01254-201ENST00000566225 PABPN1Q86U42 306 aaKnown RBP eCLIP17.36■□□□□ 0.37
LINC01254-201ENST00000566225 ANP32EQ9BTT0 268 aa17.34■□□□□ 0.37
LINC01254-201ENST00000566225 ITGAEP38570 1179 aa17.33■□□□□ 0.36
LINC01254-201ENST00000566225 KANK4Q5T7N3 995 aaPredicted RBP17.33■□□□□ 0.36
LINC01254-201ENST00000566225 SYNJ1O43426 1573 aa17.32■□□□□ 0.36
LINC01254-201ENST00000566225 KIF21BO75037 1637 aa17.32■□□□□ 0.36
LINC01254-201ENST00000566225 AEBP2Q6ZN18 517 aaPredicted RBP17.31■□□□□ 0.36
LINC01254-201ENST00000566225 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
LINC01254-201ENST00000566225 FKBP8Q14318 412 aa17.24■□□□□ 0.35
LINC01254-201ENST00000566225 DDX10Q13206 875 aaKnown RBP17.17■□□□□ 0.34
LINC01254-201ENST00000566225 UNC13AQ9UPW8 1703 aa17.17■□□□□ 0.34
LINC01254-201ENST00000566225 BCL11AQ9H165 835 aa17.16■□□□□ 0.34
LINC01254-201ENST00000566225 ARAP1Q96P48 1450 aa17.14■□□□□ 0.33
LINC01254-201ENST00000566225 CCNB3Q8WWL7 1395 aa17.11■□□□□ 0.33
LINC01254-201ENST00000566225 RRBP1Q9P2E9 1410 aaKnown RBP17.1■□□□□ 0.33
LINC01254-201ENST00000566225 HIRIP3Q9BW71 556 aaPredicted RBP17.09■□□□□ 0.33
LINC01254-201ENST00000566225 NEFLP07196 543 aa17.09■□□□□ 0.33
LINC01254-201ENST00000566225 TRIM52Q96A61 297 aa17.08■□□□□ 0.33
LINC01254-201ENST00000566225 SIN3AQ96ST3 1273 aa17.07■□□□□ 0.32
LINC01254-201ENST00000566225 RBM19Q9Y4C8 960 aaKnown RBP17.07■□□□□ 0.32
LINC01254-201ENST00000566225 RAB3GAP2Q9H2M9 1393 aa17.07■□□□□ 0.32
LINC01254-201ENST00000566225 PRXQ9BXM0 1461 aa17.03■□□□□ 0.32
LINC01254-201ENST00000566225 ATAD2BQ9ULI0 1458 aa17.01■□□□□ 0.31
LINC01254-201ENST00000566225 CUX2O14529 1486 aa17■□□□□ 0.31
LINC01254-201ENST00000566225 PEG3Q9GZU2 1588 aa16.98■□□□□ 0.31
LINC01254-201ENST00000566225 FAM50AQ14320 339 aaKnown RBP16.98■□□□□ 0.31
LINC01254-201ENST00000566225 PPP1R15AO75807 674 aaPredicted RBP16.97■□□□□ 0.31
LINC01254-201ENST00000566225 MAPKBP1O60336 1514 aa16.96■□□□□ 0.31
LINC01254-201ENST00000566225 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
LINC01254-201ENST00000566225 TOP2BQ02880 1626 aa16.96■□□□□ 0.31
LINC01254-201ENST00000566225 ANP32CO43423 234 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms