Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 GCSHP3-201ENST00000431120 391 ntBASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 CHCHD2P9-201ENST00000461726 456 ntBASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 CHCHD2P2-201ENST00000503744 321 ntBASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 FAM86B3P-203ENST00000523992 854 ntBASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AC005962.1-201ENST00000584100 773 ntBASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 PCBP2-OT1-201ENST00000634357 590 ntBASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 STX16-202ENST00000355957 4897 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 LAMB3-201ENST00000356082 4055 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 PCDHGB2-201ENST00000522605 4602 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 FN1-206ENST00000359671 8524 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 C2-209ENST00000452323 1999 ntTSL 2 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 EPB41L5-201ENST00000263713 6628 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
PDLIM3Q53GG5 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 KCNMA1-241ENST00000638606 3852 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 KCNMA1-279ENST00000640182 3852 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 MANEA-AS1-201ENST00000564541 2268 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 OS9-203ENST00000389142 2457 ntTSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CTSL-202ENST00000342020 933 ntTSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 AC084752.1-201ENST00000509766 622 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 PEBP1P2-201ENST00000603980 558 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 RPH3A-202ENST00000415485 4452 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 ENPP7P8-202ENST00000527856 1345 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 NXPE3-205ENST00000491511 8074 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 AC090502.4-201ENST00000551714 1386 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 PCDHB19P-202ENST00000625133 2914 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CICP1-201ENST00000416803 2410 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 LINC00638-201ENST00000555578 2518 ntBASIC11.24□□□□□ -0.61
PDLIM3Q53GG5 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC018629.1-201ENST00000623381 1736 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC007614.4-201ENST00000564048 1827 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 CACNA1C-204ENST00000347598 6655 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 TRAF3-201ENST00000347662 7700 ntTSL 5 BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms