Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.43■□□□□ 0.7
LIME1Q9H400 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
LIME1Q9H400 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LIME1Q9H400 ID1-201ENST00000376105 1233 ntBASIC19.43■□□□□ 0.7
LIME1Q9H400 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LIME1Q9H400 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.43■□□□□ 0.7
LIME1Q9H400 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.43■□□□□ 0.7
LIME1Q9H400 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LIME1Q9H400 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.43■□□□□ 0.7
LIME1Q9H400 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LIME1Q9H400 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.42■□□□□ 0.7
LIME1Q9H400 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LIME1Q9H400 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LIME1Q9H400 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LIME1Q9H400 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.42■□□□□ 0.7
LIME1Q9H400 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.42■□□□□ 0.7
LIME1Q9H400 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LIME1Q9H400 MIR6084-201ENST00000622012 110 ntBASIC19.42■□□□□ 0.7
LIME1Q9H400 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIME1Q9H400 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIME1Q9H400 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIME1Q9H400 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LIME1Q9H400 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIME1Q9H400 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.41■□□□□ 0.7
LIME1Q9H400 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIME1Q9H400 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LIME1Q9H400 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.41■□□□□ 0.7
LIME1Q9H400 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIME1Q9H400 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIME1Q9H400 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LIME1Q9H400 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.41■□□□□ 0.7
LIME1Q9H400 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIME1Q9H400 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIME1Q9H400 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIME1Q9H400 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.4■□□□□ 0.7
LIME1Q9H400 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIME1Q9H400 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIME1Q9H400 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
LIME1Q9H400 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.4■□□□□ 0.7
LIME1Q9H400 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
LIME1Q9H400 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.4■□□□□ 0.7
LIME1Q9H400 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIME1Q9H400 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIME1Q9H400 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.4■□□□□ 0.7
LIME1Q9H400 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.4■□□□□ 0.7
LIME1Q9H400 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIME1Q9H400 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.4■□□□□ 0.7
LIME1Q9H400 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LIME1Q9H400 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.4■□□□□ 0.7
LIME1Q9H400 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIME1Q9H400 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LIME1Q9H400 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
LIME1Q9H400 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIME1Q9H400 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LIME1Q9H400 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LIME1Q9H400 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.39■□□□□ 0.69
LIME1Q9H400 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.39■□□□□ 0.69
LIME1Q9H400 pRNA.6-201ENST00000610482 90 ntBASIC19.39■□□□□ 0.69
LIME1Q9H400 pRNA.5-201ENST00000612139 90 ntBASIC19.39■□□□□ 0.69
LIME1Q9H400 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
LIME1Q9H400 pRNA.11-201ENST00000618423 90 ntBASIC19.39■□□□□ 0.69
LIME1Q9H400 pRNA.13-201ENST00000619112 90 ntBASIC19.39■□□□□ 0.69
LIME1Q9H400 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
LIME1Q9H400 AL022069.1-201ENST00000568025 1636 ntBASIC19.39■□□□□ 0.69
LIME1Q9H400 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.39■□□□□ 0.69
LIME1Q9H400 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.39■□□□□ 0.69
LIME1Q9H400 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.39■□□□□ 0.69
LIME1Q9H400 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIME1Q9H400 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIME1Q9H400 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.38■□□□□ 0.69
LIME1Q9H400 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIME1Q9H400 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.38■□□□□ 0.69
LIME1Q9H400 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
LIME1Q9H400 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LIME1Q9H400 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LIME1Q9H400 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.38■□□□□ 0.69
LIME1Q9H400 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIME1Q9H400 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms