Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
PTP4A1Q93096 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTP4A1Q93096 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTP4A1Q93096 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTP4A1Q93096 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
PTP4A1Q93096 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTP4A1Q93096 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.77
PTP4A1Q93096 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTP4A1Q93096 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTP4A1Q93096 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
PTP4A1Q93096 AC137630.3-201ENST00000607245 391 ntBASIC19.89■□□□□ 0.77
PTP4A1Q93096 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.89■□□□□ 0.77
PTP4A1Q93096 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTP4A1Q93096 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTP4A1Q93096 AC092053.2-201ENST00000640557 1818 ntBASIC19.88■□□□□ 0.77
PTP4A1Q93096 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTP4A1Q93096 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTP4A1Q93096 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTP4A1Q93096 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.88■□□□□ 0.77
PTP4A1Q93096 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.88■□□□□ 0.77
PTP4A1Q93096 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.88■□□□□ 0.77
PTP4A1Q93096 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
PTP4A1Q93096 AC007375.3-201ENST00000600936 2314 ntBASIC19.88■□□□□ 0.77
PTP4A1Q93096 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTP4A1Q93096 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PTP4A1Q93096 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTP4A1Q93096 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTP4A1Q93096 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.87■□□□□ 0.77
PTP4A1Q93096 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTP4A1Q93096 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.87■□□□□ 0.77
PTP4A1Q93096 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTP4A1Q93096 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTP4A1Q93096 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTP4A1Q93096 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
PTP4A1Q93096 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.87■□□□□ 0.77
PTP4A1Q93096 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTP4A1Q93096 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTP4A1Q93096 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTP4A1Q93096 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.86■□□□□ 0.77
PTP4A1Q93096 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTP4A1Q93096 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTP4A1Q93096 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
PTP4A1Q93096 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTP4A1Q93096 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTP4A1Q93096 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
PTP4A1Q93096 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTP4A1Q93096 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTP4A1Q93096 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PTP4A1Q93096 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.86■□□□□ 0.77
PTP4A1Q93096 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.86■□□□□ 0.77
PTP4A1Q93096 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.86■□□□□ 0.77
PTP4A1Q93096 C11orf96-202ENST00000528572 1834 ntBASIC19.86■□□□□ 0.77
PTP4A1Q93096 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTP4A1Q93096 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTP4A1Q93096 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTP4A1Q93096 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTP4A1Q93096 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTP4A1Q93096 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTP4A1Q93096 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTP4A1Q93096 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PTP4A1Q93096 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTP4A1Q93096 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTP4A1Q93096 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 BX664725.1-201ENST00000438252 379 ntBASIC19.84■□□□□ 0.77
PTP4A1Q93096 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTP4A1Q93096 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTP4A1Q93096 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.84■□□□□ 0.77
PTP4A1Q93096 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.83■□□□□ 0.77
PTP4A1Q93096 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTP4A1Q93096 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
PTP4A1Q93096 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTP4A1Q93096 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PTP4A1Q93096 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTP4A1Q93096 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.83■□□□□ 0.77
PTP4A1Q93096 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PTP4A1Q93096 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTP4A1Q93096 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTP4A1Q93096 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PTP4A1Q93096 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PTP4A1Q93096 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.83■□□□□ 0.76
PTP4A1Q93096 Z92544.1-202ENST00000571933 1220 ntBASIC19.82■□□□□ 0.76
PTP4A1Q93096 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PTP4A1Q93096 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTP4A1Q93096 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms