Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.39■□□□□ 0.53
CSPG4Q6UVK1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 AP004607.4-201ENST00000530158 1459 ntBASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.38■□□□□ 0.53
CSPG4Q6UVK1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CSPG4Q6UVK1 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 AL499627.2-201ENST00000606283 725 ntBASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CSPG4Q6UVK1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 AC008687.6-201ENST00000596318 630 ntBASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.35■□□□□ 0.53
CSPG4Q6UVK1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 KRT18P11-201ENST00000435214 1283 ntBASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 MFSD11-216ENST00000590393 1141 ntBASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CSPG4Q6UVK1 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 ALDH1A3-203ENST00000557963 1670 ntBASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 HLA-L-211ENST00000482052 1765 ntBASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CSPG4Q6UVK1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms