Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 AC120024.1-201ENST00000562672 995 ntBASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 AL035685.1-201ENST00000636663 812 ntBASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PPP4R4Q6NUP7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
PPP4R4Q6NUP7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PPP4R4Q6NUP7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PPP4R4Q6NUP7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.08■□□□□ 0.96
PPP4R4Q6NUP7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PPP4R4Q6NUP7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PPP4R4Q6NUP7 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PPP4R4Q6NUP7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PPP4R4Q6NUP7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 C11orf96-202ENST00000528572 1834 ntBASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.04■□□□□ 0.96
PPP4R4Q6NUP7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 KRT18P24-201ENST00000344739 1156 ntBASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PPP4R4Q6NUP7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms