Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PBX2P1-201ENST00000493219 1291 ntBASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 AC005837.3-201ENST00000612163 286 ntBASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 DUX4L4-201ENST00000566884 1269 ntBASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
PTCHD3Q3KNS1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.6■■□□□ 1.05
PTCHD3Q3KNS1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 AL136162.1-201ENST00000607711 1078 ntBASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
PTCHD3Q3KNS1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 MIR935-201ENST00000401179 91 ntBASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 AC106739.1-201ENST00000617035 715 ntBASIC21.58■■□□□ 1.05
PTCHD3Q3KNS1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
PTCHD3Q3KNS1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTCHD3Q3KNS1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTCHD3Q3KNS1 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 AC133561.4-201ENST00000566112 224 ntBASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 AC135279.3-201ENST00000610945 1311 ntBASIC21.55■■□□□ 1.04
PTCHD3Q3KNS1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 AC024257.2-201ENST00000549699 147 ntBASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTCHD3Q3KNS1 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms