Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN1P58418 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CLRN1P58418 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.73■□□□□ 0.75
CLRN1P58418 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN1P58418 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.73■□□□□ 0.75
CLRN1P58418 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN1P58418 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN1P58418 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.73■□□□□ 0.75
CLRN1P58418 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN1P58418 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN1P58418 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN1P58418 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN1P58418 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.72■□□□□ 0.75
CLRN1P58418 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN1P58418 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.72■□□□□ 0.75
CLRN1P58418 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CLRN1P58418 MIR3621-201ENST00000580529 85 ntBASIC19.72■□□□□ 0.75
CLRN1P58418 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.72■□□□□ 0.75
CLRN1P58418 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CLRN1P58418 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN1P58418 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CLRN1P58418 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.72■□□□□ 0.75
CLRN1P58418 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.72■□□□□ 0.75
CLRN1P58418 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.72■□□□□ 0.75
CLRN1P58418 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLRN1P58418 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CLRN1P58418 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.71■□□□□ 0.75
CLRN1P58418 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLRN1P58418 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLRN1P58418 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.71■□□□□ 0.75
CLRN1P58418 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.71■□□□□ 0.75
CLRN1P58418 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLRN1P58418 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLRN1P58418 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.7■□□□□ 0.74
CLRN1P58418 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLRN1P58418 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CLRN1P58418 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLRN1P58418 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CLRN1P58418 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLRN1P58418 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLRN1P58418 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLRN1P58418 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CLRN1P58418 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLRN1P58418 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CLRN1P58418 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN1P58418 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN1P58418 AC233723.2-201ENST00000623798 2106 ntBASIC19.69■□□□□ 0.74
CLRN1P58418 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN1P58418 AC241377.3-202ENST00000626088 1088 ntBASIC19.69■□□□□ 0.74
CLRN1P58418 AC241585.3-202ENST00000628937 1088 ntBASIC19.69■□□□□ 0.74
CLRN1P58418 AC245100.8-202ENST00000629247 1058 ntBASIC19.69■□□□□ 0.74
CLRN1P58418 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLRN1P58418 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.69■□□□□ 0.74
CLRN1P58418 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.69■□□□□ 0.74
CLRN1P58418 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN1P58418 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLRN1P58418 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLRN1P58418 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLRN1P58418 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLRN1P58418 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CLRN1P58418 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLRN1P58418 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLRN1P58418 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.68■□□□□ 0.74
CLRN1P58418 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLRN1P58418 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLRN1P58418 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.68■□□□□ 0.74
CLRN1P58418 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.67■□□□□ 0.74
CLRN1P58418 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN1P58418 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.67■□□□□ 0.74
CLRN1P58418 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN1P58418 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.67■□□□□ 0.74
CLRN1P58418 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN1P58418 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.67■□□□□ 0.74
CLRN1P58418 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN1P58418 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN1P58418 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CLRN1P58418 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN1P58418 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
CLRN1P58418 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.66■□□□□ 0.74
CLRN1P58418 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.66■□□□□ 0.74
CLRN1P58418 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms