Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RFX3P48380 DUSP8P3-201ENST00000399571 1760 ntBASIC20.69■□□□□ 0.9
RFX3P48380 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.69■□□□□ 0.9
RFX3P48380 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
RFX3P48380 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.69■□□□□ 0.9
RFX3P48380 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
RFX3P48380 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.69■□□□□ 0.9
RFX3P48380 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RFX3P48380 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RFX3P48380 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.69■□□□□ 0.9
RFX3P48380 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RFX3P48380 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RFX3P48380 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RFX3P48380 AC131212.1-201ENST00000613771 668 ntBASIC20.69■□□□□ 0.9
RFX3P48380 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
RFX3P48380 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
RFX3P48380 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RFX3P48380 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.69■□□□□ 0.9
RFX3P48380 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RFX3P48380 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RFX3P48380 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RFX3P48380 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RFX3P48380 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RFX3P48380 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RFX3P48380 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.68■□□□□ 0.9
RFX3P48380 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RFX3P48380 CLDN5-201ENST00000403084 2357 ntBASIC20.68■□□□□ 0.9
RFX3P48380 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RFX3P48380 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RFX3P48380 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
RFX3P48380 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.67■□□□□ 0.9
RFX3P48380 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.67■□□□□ 0.9
RFX3P48380 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.67■□□□□ 0.9
RFX3P48380 MIR3621-201ENST00000580529 85 ntBASIC20.67■□□□□ 0.9
RFX3P48380 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.67■□□□□ 0.9
RFX3P48380 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.67■□□□□ 0.9
RFX3P48380 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
RFX3P48380 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RFX3P48380 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.67■□□□□ 0.9
RFX3P48380 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.67■□□□□ 0.9
RFX3P48380 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RFX3P48380 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.66■□□□□ 0.9
RFX3P48380 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RFX3P48380 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RFX3P48380 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RFX3P48380 LINC01529-204ENST00000636474 1715 ntBASIC20.65■□□□□ 0.9
RFX3P48380 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RFX3P48380 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.65■□□□□ 0.9
RFX3P48380 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.65■□□□□ 0.9
RFX3P48380 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RFX3P48380 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RFX3P48380 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RFX3P48380 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.65■□□□□ 0.9
RFX3P48380 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
RFX3P48380 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RFX3P48380 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
RFX3P48380 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RFX3P48380 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RFX3P48380 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.9
RFX3P48380 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RFX3P48380 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
RFX3P48380 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RFX3P48380 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RFX3P48380 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RFX3P48380 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.64■□□□□ 0.89
RFX3P48380 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RFX3P48380 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RFX3P48380 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.64■□□□□ 0.89
RFX3P48380 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RFX3P48380 C17orf82-201ENST00000623772 1530 ntBASIC20.63■□□□□ 0.89
RFX3P48380 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RFX3P48380 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
RFX3P48380 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.63■□□□□ 0.89
RFX3P48380 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
RFX3P48380 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
RFX3P48380 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RFX3P48380 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RFX3P48380 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RFX3P48380 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX3P48380 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX3P48380 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.62■□□□□ 0.89
RFX3P48380 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX3P48380 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.62■□□□□ 0.89
RFX3P48380 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RFX3P48380 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RFX3P48380 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.62■□□□□ 0.89
RFX3P48380 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.62■□□□□ 0.89
RFX3P48380 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
RFX3P48380 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.62■□□□□ 0.89
RFX3P48380 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.62■□□□□ 0.89
RFX3P48380 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RFX3P48380 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms