Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.42■■□□□ 1.02
HNF4AP41235 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HNF4AP41235 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.42■■□□□ 1.02
HNF4AP41235 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
HNF4AP41235 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.41■■□□□ 1.02
HNF4AP41235 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.41■■□□□ 1.02
HNF4AP41235 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.41■■□□□ 1.02
HNF4AP41235 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HNF4AP41235 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
HNF4AP41235 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.4■■□□□ 1.02
HNF4AP41235 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
HNF4AP41235 ESRRAP2-201ENST00000418437 1549 ntBASIC21.4■■□□□ 1.02
HNF4AP41235 AC233723.2-201ENST00000623798 2106 ntBASIC21.4■■□□□ 1.02
HNF4AP41235 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
HNF4AP41235 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.4■■□□□ 1.02
HNF4AP41235 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.4■■□□□ 1.02
HNF4AP41235 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.4■■□□□ 1.02
HNF4AP41235 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.4■■□□□ 1.02
HNF4AP41235 AC009086.3-201ENST00000623486 1008 ntBASIC21.4■■□□□ 1.02
HNF4AP41235 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
HNF4AP41235 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HNF4AP41235 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
HNF4AP41235 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.39■■□□□ 1.02
HNF4AP41235 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HNF4AP41235 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.39■■□□□ 1.01
HNF4AP41235 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.39■■□□□ 1.01
HNF4AP41235 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.39■■□□□ 1.01
HNF4AP41235 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HNF4AP41235 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HNF4AP41235 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.39■■□□□ 1.01
HNF4AP41235 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
HNF4AP41235 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HNF4AP41235 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
HNF4AP41235 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
HNF4AP41235 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HNF4AP41235 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
HNF4AP41235 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.38■■□□□ 1.01
HNF4AP41235 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
HNF4AP41235 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HNF4AP41235 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
HNF4AP41235 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.38■■□□□ 1.01
HNF4AP41235 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.38■■□□□ 1.01
HNF4AP41235 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
HNF4AP41235 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HNF4AP41235 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
HNF4AP41235 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HNF4AP41235 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
HNF4AP41235 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.38■■□□□ 1.01
HNF4AP41235 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
HNF4AP41235 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
HNF4AP41235 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.38■■□□□ 1.01
HNF4AP41235 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.37■■□□□ 1.01
HNF4AP41235 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HNF4AP41235 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HNF4AP41235 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HNF4AP41235 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.37■■□□□ 1.01
HNF4AP41235 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.37■■□□□ 1.01
HNF4AP41235 AC131281.2-201ENST00000520478 145 ntBASIC21.37■■□□□ 1.01
HNF4AP41235 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HNF4AP41235 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.37■■□□□ 1.01
HNF4AP41235 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HNF4AP41235 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HNF4AP41235 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
HNF4AP41235 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HNF4AP41235 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.36■■□□□ 1.01
HNF4AP41235 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.36■■□□□ 1.01
HNF4AP41235 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.36■■□□□ 1.01
HNF4AP41235 AL512631.2-201ENST00000604634 923 ntBASIC21.36■■□□□ 1.01
HNF4AP41235 MIR4466-201ENST00000606121 54 ntBASIC21.36■■□□□ 1.01
HNF4AP41235 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HNF4AP41235 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.36■■□□□ 1.01
HNF4AP41235 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
HNF4AP41235 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
HNF4AP41235 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
HNF4AP41235 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HNF4AP41235 CLDN5-201ENST00000403084 2357 ntBASIC21.36■■□□□ 1.01
HNF4AP41235 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HNF4AP41235 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.36■■□□□ 1.01
HNF4AP41235 AL117328.2-201ENST00000624617 1940 ntBASIC21.35■■□□□ 1.01
HNF4AP41235 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HNF4AP41235 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HNF4AP41235 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HNF4AP41235 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HNF4AP41235 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HNF4AP41235 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
HNF4AP41235 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.35■■□□□ 1.01
HNF4AP41235 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HNF4AP41235 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.35■■□□□ 1.01
HNF4AP41235 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HNF4AP41235 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
HNF4AP41235 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
HNF4AP41235 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms