Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMS3P0CW19 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMS3P0CW19 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS3P0CW19 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS3P0CW19 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LIMS3P0CW19 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS3P0CW19 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.7■□□□□ 0.74
LIMS3P0CW19 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS3P0CW19 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS3P0CW19 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMS3P0CW19 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS3P0CW19 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMS3P0CW19 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 AC120024.1-201ENST00000562672 995 ntBASIC19.69■□□□□ 0.74
LIMS3P0CW19 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS3P0CW19 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS3P0CW19 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS3P0CW19 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS3P0CW19 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMS3P0CW19 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.69■□□□□ 0.74
LIMS3P0CW19 AC010542.4-201ENST00000563151 1910 ntBASIC19.68■□□□□ 0.74
LIMS3P0CW19 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS3P0CW19 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS3P0CW19 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS3P0CW19 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMS3P0CW19 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS3P0CW19 U85056.1-201ENST00000616429 682 ntBASIC19.68■□□□□ 0.74
LIMS3P0CW19 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS3P0CW19 AC144652.1-201ENST00000609974 1624 ntBASIC19.68■□□□□ 0.74
LIMS3P0CW19 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LIMS3P0CW19 FAM99A-202ENST00000538190 1989 ntBASIC19.68■□□□□ 0.74
LIMS3P0CW19 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMS3P0CW19 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMS3P0CW19 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMS3P0CW19 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS3P0CW19 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS3P0CW19 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LIMS3P0CW19 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.66■□□□□ 0.74
LIMS3P0CW19 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS3P0CW19 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMS3P0CW19 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMS3P0CW19 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMS3P0CW19 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.65■□□□□ 0.74
LIMS3P0CW19 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMS3P0CW19 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS3P0CW19 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS3P0CW19 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS3P0CW19 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS3P0CW19 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMS3P0CW19 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMS3P0CW19 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMS3P0CW19 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS3P0CW19 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMS3P0CW19 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMS3P0CW19 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMS3P0CW19 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMS3P0CW19 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.64■□□□□ 0.74
LIMS3P0CW19 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMS3P0CW19 MIR4281-201ENST00000580852 62 ntBASIC19.64■□□□□ 0.73
LIMS3P0CW19 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS3P0CW19 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LIMS3P0CW19 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS3P0CW19 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS3P0CW19 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS3P0CW19 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS3P0CW19 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
LIMS3P0CW19 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMS3P0CW19 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMS3P0CW19 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS3P0CW19 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMS3P0CW19 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS3P0CW19 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS3P0CW19 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMS3P0CW19 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms