Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB3O75112 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB3O75112 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB3O75112 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB3O75112 AC004687.1-201ENST00000579003 1625 ntBASIC20.85■□□□□ 0.93
LDB3O75112 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.85■□□□□ 0.93
LDB3O75112 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB3O75112 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.85■□□□□ 0.93
LDB3O75112 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LDB3O75112 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LDB3O75112 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDB3O75112 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.84■□□□□ 0.93
LDB3O75112 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDB3O75112 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB3O75112 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
LDB3O75112 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB3O75112 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.84■□□□□ 0.93
LDB3O75112 AC133637.1-201ENST00000624115 1537 ntBASIC20.83■□□□□ 0.93
LDB3O75112 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
LDB3O75112 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
LDB3O75112 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LDB3O75112 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDB3O75112 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDB3O75112 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDB3O75112 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.83■□□□□ 0.93
LDB3O75112 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDB3O75112 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.83■□□□□ 0.93
LDB3O75112 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
LDB3O75112 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
LDB3O75112 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.82■□□□□ 0.92
LDB3O75112 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB3O75112 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB3O75112 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.82■□□□□ 0.92
LDB3O75112 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LDB3O75112 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.82■□□□□ 0.92
LDB3O75112 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LDB3O75112 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
LDB3O75112 AL136162.1-201ENST00000607711 1078 ntBASIC20.82■□□□□ 0.92
LDB3O75112 AC110285.6-201ENST00000617652 491 ntBASIC20.82■□□□□ 0.92
LDB3O75112 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.82■□□□□ 0.92
LDB3O75112 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.82■□□□□ 0.92
LDB3O75112 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LDB3O75112 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.82■□□□□ 0.92
LDB3O75112 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB3O75112 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
LDB3O75112 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.82■□□□□ 0.92
LDB3O75112 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LDB3O75112 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.81■□□□□ 0.92
LDB3O75112 AC024257.2-201ENST00000549699 147 ntBASIC20.81■□□□□ 0.92
LDB3O75112 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LDB3O75112 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.81■□□□□ 0.92
LDB3O75112 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
LDB3O75112 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB3O75112 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.8■□□□□ 0.92
LDB3O75112 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDB3O75112 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDB3O75112 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.8■□□□□ 0.92
LDB3O75112 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
LDB3O75112 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDB3O75112 AL138724.1-201ENST00000606771 1088 ntBASIC20.8■□□□□ 0.92
LDB3O75112 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
LDB3O75112 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LDB3O75112 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.8■□□□□ 0.92
LDB3O75112 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB3O75112 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB3O75112 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.79■□□□□ 0.92
LDB3O75112 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.79■□□□□ 0.92
LDB3O75112 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDB3O75112 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.79■□□□□ 0.92
LDB3O75112 PBX2P1-201ENST00000493219 1291 ntBASIC20.79■□□□□ 0.92
LDB3O75112 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LDB3O75112 AC135279.3-201ENST00000610945 1311 ntBASIC20.78■□□□□ 0.92
LDB3O75112 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
LDB3O75112 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.78■□□□□ 0.92
LDB3O75112 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB3O75112 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LDB3O75112 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
LDB3O75112 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.78■□□□□ 0.92
LDB3O75112 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.78■□□□□ 0.92
LDB3O75112 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.78■□□□□ 0.92
LDB3O75112 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LDB3O75112 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB3O75112 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LDB3O75112 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.78■□□□□ 0.92
LDB3O75112 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.78■□□□□ 0.92
LDB3O75112 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.78■□□□□ 0.92
LDB3O75112 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LDB3O75112 AC011298.3-201ENST00000615796 283 ntBASIC20.78■□□□□ 0.92
LDB3O75112 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB3O75112 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDB3O75112 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.78■□□□□ 0.92
LDB3O75112 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms