Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM13O60858 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.81■■□□□ 1.08
TRIM13O60858 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM13O60858 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
TRIM13O60858 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM13O60858 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM13O60858 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM13O60858 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM13O60858 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM13O60858 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM13O60858 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM13O60858 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM13O60858 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM13O60858 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
TRIM13O60858 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.79■■□□□ 1.08
TRIM13O60858 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM13O60858 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM13O60858 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
TRIM13O60858 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM13O60858 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM13O60858 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM13O60858 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.78■■□□□ 1.08
TRIM13O60858 SNX5-217ENST00000606557 1087 ntBASIC21.78■■□□□ 1.08
TRIM13O60858 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM13O60858 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM13O60858 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM13O60858 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM13O60858 MIR4508-201ENST00000584178 70 ntBASIC21.77■■□□□ 1.08
TRIM13O60858 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM13O60858 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM13O60858 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM13O60858 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM13O60858 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM13O60858 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.76■■□□□ 1.07
TRIM13O60858 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM13O60858 TSPY13P-201ENST00000338964 914 ntBASIC21.76■■□□□ 1.07
TRIM13O60858 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.76■■□□□ 1.07
TRIM13O60858 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
TRIM13O60858 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
TRIM13O60858 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM13O60858 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM13O60858 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
TRIM13O60858 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.75■■□□□ 1.07
TRIM13O60858 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM13O60858 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM13O60858 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.75■■□□□ 1.07
TRIM13O60858 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
TRIM13O60858 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM13O60858 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM13O60858 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.75■■□□□ 1.07
TRIM13O60858 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM13O60858 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM13O60858 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
TRIM13O60858 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.75■■□□□ 1.07
TRIM13O60858 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM13O60858 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM13O60858 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM13O60858 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.74■■□□□ 1.07
TRIM13O60858 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.74■■□□□ 1.07
TRIM13O60858 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
TRIM13O60858 PKD1P6-201ENST00000343738 4769 ntBASIC21.74■■□□□ 1.07
TRIM13O60858 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM13O60858 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM13O60858 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM13O60858 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
TRIM13O60858 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM13O60858 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM13O60858 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM13O60858 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM13O60858 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM13O60858 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM13O60858 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 LINC01529-204ENST00000636474 1715 ntBASIC21.72■■□□□ 1.07
TRIM13O60858 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
TRIM13O60858 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.72■■□□□ 1.07
TRIM13O60858 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.72■■□□□ 1.07
TRIM13O60858 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.72■■□□□ 1.07
TRIM13O60858 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM13O60858 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM13O60858 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.71■■□□□ 1.07
TRIM13O60858 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TRIM13O60858 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM13O60858 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM13O60858 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
TRIM13O60858 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
TRIM13O60858 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms