Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.02■■□□□ 1.6
MSH4O15457 BX842568.3-201ENST00000418104 571 ntBASIC25.02■■□□□ 1.6
MSH4O15457 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
MSH4O15457 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.02■■□□□ 1.6
MSH4O15457 AC010525.1-201ENST00000585559 441 ntBASIC25.02■■□□□ 1.6
MSH4O15457 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.02■■□□□ 1.6
MSH4O15457 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH4O15457 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH4O15457 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH4O15457 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
MSH4O15457 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
MSH4O15457 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
MSH4O15457 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
MSH4O15457 AC233992.3-201ENST00000607491 485 ntBASIC25.01■■□□□ 1.59
MSH4O15457 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
MSH4O15457 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MSH4O15457 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.01■■□□□ 1.59
MSH4O15457 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
MSH4O15457 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25■■□□□ 1.59
MSH4O15457 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
MSH4O15457 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
MSH4O15457 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
MSH4O15457 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
MSH4O15457 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
MSH4O15457 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
MSH4O15457 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
MSH4O15457 OR2I1P-207ENST00000453522 948 ntBASIC25■■□□□ 1.59
MSH4O15457 AC027682.1-201ENST00000562846 899 ntBASIC25■■□□□ 1.59
MSH4O15457 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
MSH4O15457 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
MSH4O15457 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
MSH4O15457 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
MSH4O15457 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
MSH4O15457 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
MSH4O15457 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
MSH4O15457 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
MSH4O15457 AC099791.1-201ENST00000416440 715 ntBASIC24.99■■□□□ 1.59
MSH4O15457 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.99■■□□□ 1.59
MSH4O15457 AC091305.1-201ENST00000479476 895 ntBASIC24.99■■□□□ 1.59
MSH4O15457 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
MSH4O15457 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
MSH4O15457 RASA4CP-201ENST00000424092 1398 ntBASIC24.98■■□□□ 1.59
MSH4O15457 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
MSH4O15457 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.98■■□□□ 1.59
MSH4O15457 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
MSH4O15457 CASK-201ENST00000378154 2494 ntTSL 5 BASIC24.97■■□□□ 1.59
MSH4O15457 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
MSH4O15457 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.97■■□□□ 1.59
MSH4O15457 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
MSH4O15457 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH4O15457 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH4O15457 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.97■■□□□ 1.59
MSH4O15457 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.97■■□□□ 1.59
MSH4O15457 CA15P2-201ENST00000611168 834 ntBASIC24.97■■□□□ 1.59
MSH4O15457 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH4O15457 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
MSH4O15457 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH4O15457 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
MSH4O15457 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
MSH4O15457 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH4O15457 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
MSH4O15457 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
MSH4O15457 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.96■■□□□ 1.59
MSH4O15457 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.96■■□□□ 1.59
MSH4O15457 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
MSH4O15457 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
MSH4O15457 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.95■■□□□ 1.59
MSH4O15457 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.59
MSH4O15457 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
MSH4O15457 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH4O15457 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.95■■□□□ 1.58
MSH4O15457 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH4O15457 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
MSH4O15457 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH4O15457 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
MSH4O15457 DUSP8P5-201ENST00000422884 1815 ntBASIC24.94■■□□□ 1.58
MSH4O15457 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.94■■□□□ 1.58
MSH4O15457 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
MSH4O15457 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.94■■□□□ 1.58
MSH4O15457 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH4O15457 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.93■■□□□ 1.58
MSH4O15457 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.93■■□□□ 1.58
MSH4O15457 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
MSH4O15457 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
MSH4O15457 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
MSH4O15457 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
MSH4O15457 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
MSH4O15457 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC24.92■■□□□ 1.58
MSH4O15457 MPST-208ENST00000628507 698 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH4O15457 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH4O15457 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
MSH4O15457 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC24.91■■□□□ 1.58
MSH4O15457 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
MSH4O15457 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH4O15457 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH4O15457 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH4O15457 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
MSH4O15457 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.91■■□□□ 1.58
MSH4O15457 AC105265.2-201ENST00000467189 838 ntBASIC24.91■■□□□ 1.58
MSH4O15457 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms