Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
CACNA1AO00555 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CACNA1AO00555 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CACNA1AO00555 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
CACNA1AO00555 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.35■■□□□ 1.01
CACNA1AO00555 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CACNA1AO00555 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.35■■□□□ 1.01
CACNA1AO00555 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CACNA1AO00555 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC21.35■■□□□ 1.01
CACNA1AO00555 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CACNA1AO00555 KRT18P21-201ENST00000515767 1272 ntBASIC21.34■■□□□ 1.01
CACNA1AO00555 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CACNA1AO00555 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.34■■□□□ 1.01
CACNA1AO00555 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CACNA1AO00555 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.34■■□□□ 1.01
CACNA1AO00555 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
CACNA1AO00555 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CACNA1AO00555 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.33■■□□□ 1.01
CACNA1AO00555 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.33■■□□□ 1
CACNA1AO00555 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CACNA1AO00555 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.33■■□□□ 1
CACNA1AO00555 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.33■■□□□ 1
CACNA1AO00555 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.33■■□□□ 1
CACNA1AO00555 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
CACNA1AO00555 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CACNA1AO00555 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1AO00555 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.32■■□□□ 1
CACNA1AO00555 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CACNA1AO00555 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.32■■□□□ 1
CACNA1AO00555 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1AO00555 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.32■■□□□ 1
CACNA1AO00555 MIR718-201ENST00000390190 70 ntBASIC21.32■■□□□ 1
CACNA1AO00555 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.32■■□□□ 1
CACNA1AO00555 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.32■■□□□ 1
CACNA1AO00555 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.32■■□□□ 1
CACNA1AO00555 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.31■■□□□ 1
CACNA1AO00555 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.31■■□□□ 1
CACNA1AO00555 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1AO00555 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1AO00555 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1AO00555 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1AO00555 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.31■■□□□ 1
CACNA1AO00555 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.3■■□□□ 1
CACNA1AO00555 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CACNA1AO00555 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.3■■□□□ 1
CACNA1AO00555 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.3■■□□□ 1
CACNA1AO00555 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1AO00555 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1AO00555 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.3■■□□□ 1
CACNA1AO00555 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.3■■□□□ 1
CACNA1AO00555 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.29■■□□□ 1
CACNA1AO00555 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.29■■□□□ 1
CACNA1AO00555 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.29■■□□□ 1
CACNA1AO00555 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.29■■□□□ 1
CACNA1AO00555 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1AO00555 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1AO00555 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1AO00555 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CACNA1AO00555 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1AO00555 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CACNA1AO00555 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CACNA1AO00555 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.28■■□□□ 1
CACNA1AO00555 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.28■■□□□ 1
CACNA1AO00555 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.28■■□□□ 1
CACNA1AO00555 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.28■■□□□ 1
CACNA1AO00555 MYC-209ENST00000641252 345 ntBASIC21.28■■□□□ 1
CACNA1AO00555 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.28■■□□□ 1
CACNA1AO00555 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1AO00555 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1AO00555 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1AO00555 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CACNA1AO00555 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1AO00555 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
CACNA1AO00555 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CACNA1AO00555 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1AO00555 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.27■■□□□ 1
CACNA1AO00555 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.27■■□□□ 1
CACNA1AO00555 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
CACNA1AO00555 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CACNA1AO00555 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.27■■□□□ 1
CACNA1AO00555 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.27■■□□□ 1
CACNA1AO00555 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.27■■□□□ 1
CACNA1AO00555 AP004609.3-201ENST00000610705 1884 ntBASIC21.27■■□□□ 1
CACNA1AO00555 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
CACNA1AO00555 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1AO00555 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.26■□□□□ 0.99
CACNA1AO00555 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1AO00555 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1AO00555 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CACNA1AO00555 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CACNA1AO00555 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms