Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
CBX4O00257 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CBX4O00257 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.65■■□□□ 1.22
CBX4O00257 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CBX4O00257 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.65■■□□□ 1.22
CBX4O00257 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.65■■□□□ 1.22
CBX4O00257 AP001330.3-201ENST00000520123 633 ntBASIC22.65■■□□□ 1.22
CBX4O00257 AF213884.3-201ENST00000563833 479 ntBASIC22.65■■□□□ 1.22
CBX4O00257 AC008764.7-201ENST00000593779 1081 ntBASIC22.65■■□□□ 1.22
CBX4O00257 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CBX4O00257 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.65■■□□□ 1.22
CBX4O00257 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CBX4O00257 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CBX4O00257 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.65■■□□□ 1.22
CBX4O00257 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
CBX4O00257 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
CBX4O00257 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CBX4O00257 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.64■■□□□ 1.22
CBX4O00257 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CBX4O00257 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
CBX4O00257 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CBX4O00257 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CBX4O00257 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CBX4O00257 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.63■■□□□ 1.21
CBX4O00257 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
CBX4O00257 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.63■■□□□ 1.21
CBX4O00257 AC004687.1-201ENST00000579003 1625 ntBASIC22.63■■□□□ 1.21
CBX4O00257 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
CBX4O00257 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CBX4O00257 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CBX4O00257 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.62■■□□□ 1.21
CBX4O00257 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
CBX4O00257 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CBX4O00257 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.62■■□□□ 1.21
CBX4O00257 MIR939-201ENST00000401314 82 ntBASIC22.62■■□□□ 1.21
CBX4O00257 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CBX4O00257 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.62■■□□□ 1.21
CBX4O00257 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
CBX4O00257 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.62■■□□□ 1.21
CBX4O00257 AL136967.2-201ENST00000623968 743 ntBASIC22.62■■□□□ 1.21
CBX4O00257 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
CBX4O00257 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CBX4O00257 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.62■■□□□ 1.21
CBX4O00257 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CBX4O00257 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.61■■□□□ 1.21
CBX4O00257 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.61■■□□□ 1.21
CBX4O00257 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.61■■□□□ 1.21
CBX4O00257 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
CBX4O00257 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.61■■□□□ 1.21
CBX4O00257 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CBX4O00257 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.61■■□□□ 1.21
CBX4O00257 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.61■■□□□ 1.21
CBX4O00257 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
CBX4O00257 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
CBX4O00257 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
CBX4O00257 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.6■■□□□ 1.21
CBX4O00257 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CBX4O00257 BX842568.3-201ENST00000418104 571 ntBASIC22.6■■□□□ 1.21
CBX4O00257 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CBX4O00257 SLC47A1P1-202ENST00000449666 945 ntBASIC22.6■■□□□ 1.21
CBX4O00257 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CBX4O00257 AC027682.1-201ENST00000562846 899 ntBASIC22.6■■□□□ 1.21
CBX4O00257 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.6■■□□□ 1.21
CBX4O00257 AC233992.3-201ENST00000607491 485 ntBASIC22.6■■□□□ 1.21
CBX4O00257 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
CBX4O00257 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CBX4O00257 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CBX4O00257 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.59■■□□□ 1.21
CBX4O00257 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CBX4O00257 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
CBX4O00257 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CBX4O00257 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CBX4O00257 AC099791.1-201ENST00000416440 715 ntBASIC22.59■■□□□ 1.21
CBX4O00257 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CBX4O00257 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.59■■□□□ 1.21
CBX4O00257 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.58■■□□□ 1.21
CBX4O00257 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
CBX4O00257 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
CBX4O00257 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CBX4O00257 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.58■■□□□ 1.21
CBX4O00257 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.58■■□□□ 1.21
CBX4O00257 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CBX4O00257 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CBX4O00257 AC105265.2-201ENST00000467189 838 ntBASIC22.58■■□□□ 1.21
CBX4O00257 AC091305.1-201ENST00000479476 895 ntBASIC22.58■■□□□ 1.21
CBX4O00257 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CBX4O00257 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CBX4O00257 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
CBX4O00257 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.58■■□□□ 1.2
CBX4O00257 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CBX4O00257 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CBX4O00257 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
CBX4O00257 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms