Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV3A0A0B4J244 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV3A0A0B4J244 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.83■□□□□ 0.45
TRAV3A0A0B4J244 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.83■□□□□ 0.45
TRAV3A0A0B4J244 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.83■□□□□ 0.45
TRAV3A0A0B4J244 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.83■□□□□ 0.45
TRAV3A0A0B4J244 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
TRAV3A0A0B4J244 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 AC005703.6-201ENST00000623265 1329 ntBASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 AC080038.3-201ENST00000623346 1952 ntBASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV3A0A0B4J244 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 AC139530.1-201ENST00000575312 1977 ntBASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 AC087742.1-201ENST00000575880 1738 ntBASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 PRTG-204ENST00000561292 833 ntTSL 3 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 MIR6722-201ENST00000617286 78 ntBASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV3A0A0B4J244 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 ASB1-202ENST00000409297 878 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 BX664725.1-201ENST00000438252 379 ntBASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV3A0A0B4J244 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV3A0A0B4J244 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 LINC01529-204ENST00000636474 1715 ntBASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
TRAV3A0A0B4J244 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 RNF146-205ENST00000477776 762 ntTSL 3 BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV3A0A0B4J244 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TRAV3A0A0B4J244 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms