Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 GOSR1-204ENST00000451249 1231 ntAPPRIS ALT1 TSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 RN7SL351P-201ENST00000469306 248 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AC104212.2-201ENST00000478813 628 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AL359219.1-201ENST00000556311 934 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AL136982.5-201ENST00000605222 294 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 AL132780.4-201ENST00000624870 1135 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 GBAP1-208ENST00000566701 1546 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 POM121L14P-201ENST00000406100 1558 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 RBM22P2-201ENST00000393978 1814 ntBASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC13.57□□□□□ -0.24
LYSMD3Q7Z3D4 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 AP001972.5-201ENST00000624624 2338 ntBASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 LINC00634-202ENST00000505157 222 ntBASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 BAK1P2-201ENST00000532665 631 ntBASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 AL133445.2-201ENST00000611191 527 ntBASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 CTBP2P8-201ENST00000422584 1330 ntBASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LYSMD3Q7Z3D4 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 U3.5-201ENST00000363448 216 ntBASIC13.55□□□□□ -0.24
LYSMD3Q7Z3D4 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms