Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 AC092810.2-201ENST00000431570 362 ntBASIC12.39□□□□□ -0.43
RFC3P40938 GOLGA6L16P-201ENST00000441780 1299 ntBASIC12.39□□□□□ -0.43
RFC3P40938 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 PPOX-204ENST00000462866 473 ntTSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 CASP3-205ENST00000517513 964 ntTSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 AC092862.1-201ENST00000541534 533 ntBASIC12.39□□□□□ -0.43
RFC3P40938 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 DNM1P51-201ENST00000558149 522 ntBASIC12.39□□□□□ -0.43
RFC3P40938 ABHD17AP9-201ENST00000561925 548 ntBASIC12.39□□□□□ -0.43
RFC3P40938 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC12.39□□□□□ -0.43
RFC3P40938 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 AC132812.1-201ENST00000583145 892 ntBASIC12.39□□□□□ -0.43
RFC3P40938 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC12.39□□□□□ -0.43
RFC3P40938 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC12.39□□□□□ -0.43
RFC3P40938 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
RFC3P40938 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 FAM90A12P-201ENST00000519497 2375 ntBASIC12.38□□□□□ -0.43
RFC3P40938 FAM90A24P-201ENST00000520792 2369 ntBASIC12.38□□□□□ -0.43
RFC3P40938 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 CUL2-210ENST00000626172 4115 ntTSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
RFC3P40938 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC12.38□□□□□ -0.43
RFC3P40938 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 HLA-DPA2-205ENST00000433582 733 ntBASIC12.38□□□□□ -0.43
RFC3P40938 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC12.38□□□□□ -0.43
RFC3P40938 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
RFC3P40938 AC106047.2-201ENST00000511723 743 ntBASIC12.38□□□□□ -0.43
RFC3P40938 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 SAA2-206ENST00000530400 323 ntTSL 3 BASIC12.38□□□□□ -0.43
RFC3P40938 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC12.38□□□□□ -0.43
RFC3P40938 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC12.38□□□□□ -0.43
RFC3P40938 TYMSP2-201ENST00000589501 424 ntBASIC12.38□□□□□ -0.43
RFC3P40938 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 AL356740.1-201ENST00000602192 1297 ntBASIC12.38□□□□□ -0.43
RFC3P40938 AC026120.2-201ENST00000617239 309 ntBASIC12.38□□□□□ -0.43
RFC3P40938 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC12.38□□□□□ -0.43
RFC3P40938 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC12.38□□□□□ -0.43
RFC3P40938 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
RFC3P40938 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12.38□□□□□ -0.43
RFC3P40938 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
RFC3P40938 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
RFC3P40938 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC12.37□□□□□ -0.43
RFC3P40938 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
RFC3P40938 MANEA-AS1-201ENST00000564541 2268 ntBASIC12.37□□□□□ -0.43
RFC3P40938 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
RFC3P40938 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
RFC3P40938 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms