Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC005014.1-201ENST00000432006 2976 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 KCNJ14-202ENST00000391884 3990 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 ZNF747-201ENST00000252799 3936 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 RBM12-202ENST00000374104 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 PTPRG-201ENST00000295874 4650 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 C2-206ENST00000442278 2434 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 ARSG-201ENST00000448504 4642 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 SEMA6A-202ENST00000343348 6878 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 NHP2-202ENST00000314397 599 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 SNX15-201ENST00000352068 771 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 BCAS2P2-201ENST00000425064 674 ntBASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 AC104073.2-201ENST00000453737 312 ntBASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 AC007881.3-201ENST00000608897 607 ntBASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 SNHG14-212ENST00000549804 7844 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 COBLL1-202ENST00000375458 9367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 CBL-201ENST00000264033 11231 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 DENND4C-205ENST00000434457 6718 ntTSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 NPLOC4-202ENST00000374747 5538 ntTSL 2 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 MTHFR-202ENST00000376583 7044 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
PDLIM3Q53GG5 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 AL845472.1-202ENST00000624675 4080 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 FANCC-202ENST00000375305 4504 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PLEC-208ENST00000436759 14787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 E2F3P2-201ENST00000447755 1422 ntBASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SLC25A24-203ENST00000565488 4271 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ARHGEF10-205ENST00000518288 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 ATP13A2-203ENST00000452699 3981 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PRRG4-201ENST00000257836 5530 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 PCDHGA9-201ENST00000573521 4605 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PDLIM3Q53GG5 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms