Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 AC092115.1-201ENST00000566277 1402 ntBASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NPIPA3F8WFD2 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AC041040.1-201ENST00000425197 460 ntBASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 IDS-203ENST00000428056 1213 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AC244197.1-201ENST00000456494 951 ntBASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 PPOX-204ENST00000462866 473 ntTSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AC026470.1-201ENST00000478038 846 ntBASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AL359219.1-201ENST00000556311 934 ntBASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 RNF146-211ENST00000609447 607 ntTSL 4 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NPIPA3F8WFD2 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms