Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PCDHGA12-201ENST00000252085 4747 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AC024293.1-201ENST00000467930 498 ntBASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AP003398.1-201ENST00000531124 318 ntBASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 PTPN20CP-201ENST00000614090 920 ntBASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AL136295.7-201ENST00000619226 1200 ntBASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 C17orf51-201ENST00000391411 7914 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 RPL13AP3-202ENST00000494676 1473 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 KRT8P4-201ENST00000509735 1454 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 MAGEL2-201ENST00000532292 4298 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 CDC6-201ENST00000209728 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC125807.2-201ENST00000513358 3514 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 TFDP2-215ENST00000489671 9857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC004623.1-201ENST00000624592 2127 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 GNG4-204ENST00000450593 4978 ntAPPRIS P1 TSL 4 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 HNRNPA1P58-201ENST00000403629 610 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 RNMTL1P1-201ENST00000454103 560 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC009955.4-201ENST00000597192 544 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC011247.3-201ENST00000603297 438 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC010503.4-201ENST00000615487 688 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC244250.3-201ENST00000620749 366 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 NAP1L6-202ENST00000641404 1222 ntBASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PDLIM3Q53GG5 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms