Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AQP7P3-201ENST00000624547 1041 ntBASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 AC018445.4-201ENST00000624066 2291 ntBASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 AL031432.4-201ENST00000641729 2190 ntBASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 TBC1D3F-201ENST00000620210 2117 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SHROOM3Q8TF72 CTBP2P8-201ENST00000422584 1330 ntBASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 SNX15-201ENST00000352068 771 ntTSL 5 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 AC022080.1-201ENST00000366255 781 ntBASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 FAM86B3P-203ENST00000523992 854 ntBASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 AC226150.1-201ENST00000544259 466 ntBASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 MICA-210ENST00000616296 2260 ntTSL 5 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SHROOM3Q8TF72 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 RN7SL23P-201ENST00000484055 275 ntBASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC026304.1-201ENST00000597953 561 ntBASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 C2-209ENST00000452323 1999 ntTSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AC126755.1-201ENST00000525846 6405 ntBASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 IGHEP1-201ENST00000521393 651 ntBASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SHROOM3Q8TF72 AP000920.1-201ENST00000531824 344 ntBASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms