Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC15.4■□□□□ 0.06
SMARCA1P28370 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 STRAP-202ENST00000419869 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 MAGED2-207ENST00000396224 2026 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 CD74-203ENST00000377795 1138 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 AC105935.1-203ENST00000419183 600 ntTSL 3 BASIC15.4■□□□□ 0.06
SMARCA1P28370 HNRNPA3P12-201ENST00000437410 1063 ntBASIC15.4■□□□□ 0.06
SMARCA1P28370 AC026470.1-201ENST00000478038 846 ntBASIC15.4■□□□□ 0.06
SMARCA1P28370 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC15.4■□□□□ 0.06
SMARCA1P28370 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC15.4■□□□□ 0.06
SMARCA1P28370 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC15.4■□□□□ 0.06
SMARCA1P28370 AC244250.3-201ENST00000620749 366 ntBASIC15.4■□□□□ 0.06
SMARCA1P28370 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 AC139491.6-202ENST00000637171 2077 ntBASIC15.4■□□□□ 0.06
SMARCA1P28370 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 AC125807.2-201ENST00000513358 3514 ntBASIC15.4■□□□□ 0.06
SMARCA1P28370 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 FAM183BP-201ENST00000409072 1595 ntBASIC15.4■□□□□ 0.06
SMARCA1P28370 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
SMARCA1P28370 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.4■□□□□ 0.06
SMARCA1P28370 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 NFIX-201ENST00000358552 1727 ntTSL 5 BASIC15.4■□□□□ 0.06
SMARCA1P28370 MRPL43-202ENST00000318325 2134 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC15.4■□□□□ 0.06
SMARCA1P28370 ACOX2-201ENST00000302819 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SMARCA1P28370 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 ZNF772-203ENST00000425074 1601 ntTSL 2 BASIC15.39■□□□□ 0.05
SMARCA1P28370 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SMARCA1P28370 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC15.39■□□□□ 0.05
SMARCA1P28370 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC15.39■□□□□ 0.05
SMARCA1P28370 Z98257.2-202ENST00000641138 1548 ntBASIC15.39■□□□□ 0.05
SMARCA1P28370 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 MRPL27-201ENST00000225969 716 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
SMARCA1P28370 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC15.39■□□□□ 0.05
SMARCA1P28370 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 RPL13AP19-201ENST00000434320 584 ntBASIC15.39■□□□□ 0.05
SMARCA1P28370 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC15.39■□□□□ 0.05
SMARCA1P28370 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 RPS15P5-201ENST00000449885 432 ntBASIC15.39■□□□□ 0.05
SMARCA1P28370 AL451000.1-201ENST00000451300 1186 ntBASIC15.39■□□□□ 0.05
SMARCA1P28370 AC106047.2-201ENST00000511723 743 ntBASIC15.39■□□□□ 0.05
SMARCA1P28370 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 OR4A49P-201ENST00000527050 632 ntBASIC15.39■□□□□ 0.05
SMARCA1P28370 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC15.39■□□□□ 0.05
SMARCA1P28370 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC15.39■□□□□ 0.05
SMARCA1P28370 AL160287.1-203ENST00000637960 1061 ntBASIC15.39■□□□□ 0.05
SMARCA1P28370 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC15.39■□□□□ 0.05
SMARCA1P28370 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC15.39■□□□□ 0.05
SMARCA1P28370 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 RGS6-202ENST00000355512 1564 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SMARCA1P28370 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SMARCA1P28370 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SMARCA1P28370 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms