Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 ELMOD3-201ENST00000315658 2685 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SHROOM3Q8TF72 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 BRI3P1-201ENST00000440440 378 ntBASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 HMGB1P24-201ENST00000611897 328 ntBASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC002472.4-201ENST00000641915 272 ntBASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AFG3L2P1-201ENST00000521792 1763 ntBASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 ZFP69B-201ENST00000361584 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 OR2I1P-209ENST00000641730 5365 ntBASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 VDAC1P11-201ENST00000458323 852 ntBASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 PPIA-208ENST00000489459 907 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 PPIA-210ENST00000620047 827 ntTSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SHROOM3Q8TF72 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 DTX2P1-201ENST00000425797 1633 ntBASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
SHROOM3Q8TF72 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms