Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 HPR-203ENST00000561690 634 ntTSL 5 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 MIR6770-3-201ENST00000616362 60 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 MIR6770-2-201ENST00000618304 60 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 MIR6770-1-201ENST00000622248 60 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 RHBDL2-201ENST00000289248 2129 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 SHANK2-AS3-201ENST00000307548 1683 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 PRKAG1-201ENST00000316299 1683 ntTSL 2 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 LEMD2-207ENST00000508327 1306 ntTSL 2 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 SETDB1-202ENST00000368962 1478 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 WDSUB1-204ENST00000409124 1600 ntTSL 5 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 FHL2-208ENST00000409807 1601 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 RBMXP2-201ENST00000434705 1168 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 AC022483.2-201ENST00000461464 555 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 ZNF226-212ENST00000588795 641 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 BID-211ENST00000611040 419 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 AC025278.3-201ENST00000636139 796 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 HMGB1-202ENST00000339872 2319 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 AL445250.1-201ENST00000641671 2259 ntBASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 GOLGA8A-201ENST00000359187 1877 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 IL17RB-201ENST00000288167 2010 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 LIPC-202ENST00000356113 2161 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 TSPAN16-201ENST00000316737 1040 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 CFAP36-205ENST00000407816 1125 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 CITED1-206ENST00000431381 941 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 IFT22-204ENST00000437644 875 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 CITED1-207ENST00000445983 820 ntAPPRIS P3 TSL 2 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 RANBP6-202ENST00000485372 1000 ntTSL 2 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 SYBU-203ENST00000408889 2776 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 AC005562.1-201ENST00000583030 3219 ntBASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 LINC01801-202ENST00000590963 2077 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
VPS13DQ5THJ4 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 NAP1L1-206ENST00000544816 1597 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AL663070.1-201ENST00000438210 725 ntBASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 CAP2-207ENST00000493172 861 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 SLIRP-209ENST00000557342 408 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AP005203.1-202ENST00000584204 561 ntTSL 4 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 TTC28-AS1_1.1-201ENST00000614690 162 ntBASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AC130686.1-201ENST00000622936 2466 ntBASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 TPD52L3-203ENST00000381428 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 APTX-206ENST00000379825 2023 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 FMR1-220ENST00000621987 1352 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 KRT31-201ENST00000251645 1596 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 LILRA4-201ENST00000291759 1944 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 MRPL45P2-201ENST00000425159 927 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 MIR646HG-204ENST00000427820 805 ntTSL 5 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AL158824.1-201ENST00000451825 450 ntBASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AC098591.1-202ENST00000507914 937 ntBASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AC090192.2-201ENST00000517482 553 ntTSL 4 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 AP003717.2-201ENST00000534962 898 ntBASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC8.64□□□□□ -1.03
VPS13DQ5THJ4 PIGA-209ENST00000634582 965 ntTSL 2 BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms