Protein–RNA interactions for Protein: Q9Y6K1

DNMT3A, DNA (cytosine-5)-methyltransferase 3A, humanhuman

Predicted RBP Predictions only

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3AQ9Y6K1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
DNMT3AQ9Y6K1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DNMT3AQ9Y6K1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
DNMT3AQ9Y6K1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DNMT3AQ9Y6K1 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
DNMT3AQ9Y6K1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 AL031432.3-201ENST00000607698 485 ntBASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DNMT3AQ9Y6K1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 SUDS3P1-201ENST00000505831 966 ntBASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.78■■□□□ 1.08
DNMT3AQ9Y6K1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 BX842568.3-201ENST00000418104 571 ntBASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
DNMT3AQ9Y6K1 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
DNMT3AQ9Y6K1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
DNMT3AQ9Y6K1 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 OR2I1P-207ENST00000453522 948 ntBASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 DUSP8P3-201ENST00000399571 1760 ntBASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DNMT3AQ9Y6K1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 AC233992.3-201ENST00000607491 485 ntBASIC21.75■■□□□ 1.07
DNMT3AQ9Y6K1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 AL136967.2-201ENST00000623968 743 ntBASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DNMT3AQ9Y6K1 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DNMT3AQ9Y6K1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.73■■□□□ 1.07
DNMT3AQ9Y6K1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DNMT3AQ9Y6K1 MIR939-201ENST00000401314 82 ntBASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms