Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
DDX41Q9UJV9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
DDX41Q9UJV9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
DDX41Q9UJV9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
DDX41Q9UJV9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
DDX41Q9UJV9 AC027682.1-201ENST00000562846 899 ntBASIC25.49■■□□□ 1.67
DDX41Q9UJV9 AC008764.7-201ENST00000593779 1081 ntBASIC25.49■■□□□ 1.67
DDX41Q9UJV9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
DDX41Q9UJV9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
DDX41Q9UJV9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.49■■□□□ 1.67
DDX41Q9UJV9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
DDX41Q9UJV9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.47■■□□□ 1.67
DDX41Q9UJV9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
DDX41Q9UJV9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
DDX41Q9UJV9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
DDX41Q9UJV9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.47■■□□□ 1.67
DDX41Q9UJV9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.47■■□□□ 1.67
DDX41Q9UJV9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
DDX41Q9UJV9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
DDX41Q9UJV9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
DDX41Q9UJV9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.46■■□□□ 1.67
DDX41Q9UJV9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.46■■□□□ 1.67
DDX41Q9UJV9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
DDX41Q9UJV9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
DDX41Q9UJV9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.67
DDX41Q9UJV9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
DDX41Q9UJV9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC25.45■■□□□ 1.67
DDX41Q9UJV9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 AC099791.1-201ENST00000416440 715 ntBASIC25.45■■□□□ 1.66
DDX41Q9UJV9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
DDX41Q9UJV9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.44■■□□□ 1.66
DDX41Q9UJV9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
DDX41Q9UJV9 pRNA.6-201ENST00000610482 90 ntBASIC25.44■■□□□ 1.66
DDX41Q9UJV9 pRNA.5-201ENST00000612139 90 ntBASIC25.44■■□□□ 1.66
DDX41Q9UJV9 pRNA.11-201ENST00000618423 90 ntBASIC25.44■■□□□ 1.66
DDX41Q9UJV9 pRNA.13-201ENST00000619112 90 ntBASIC25.44■■□□□ 1.66
DDX41Q9UJV9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
DDX41Q9UJV9 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.44■■□□□ 1.66
DDX41Q9UJV9 DUSP8P5-201ENST00000422884 1815 ntBASIC25.44■■□□□ 1.66
DDX41Q9UJV9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
DDX41Q9UJV9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC25.44■■□□□ 1.66
DDX41Q9UJV9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.43■■□□□ 1.66
DDX41Q9UJV9 AC141586.4-201ENST00000624558 1573 ntBASIC25.43■■□□□ 1.66
DDX41Q9UJV9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
DDX41Q9UJV9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
DDX41Q9UJV9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
DDX41Q9UJV9 AC233992.3-201ENST00000607491 485 ntBASIC25.42■■□□□ 1.66
DDX41Q9UJV9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
DDX41Q9UJV9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
DDX41Q9UJV9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
DDX41Q9UJV9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.41■■□□□ 1.66
DDX41Q9UJV9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
DDX41Q9UJV9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
DDX41Q9UJV9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.41■■□□□ 1.66
DDX41Q9UJV9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
DDX41Q9UJV9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
DDX41Q9UJV9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
DDX41Q9UJV9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
DDX41Q9UJV9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
DDX41Q9UJV9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
DDX41Q9UJV9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
DDX41Q9UJV9 BX842568.3-201ENST00000418104 571 ntBASIC25.4■■□□□ 1.66
DDX41Q9UJV9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.4■■□□□ 1.66
DDX41Q9UJV9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
DDX41Q9UJV9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.39■■□□□ 1.66
DDX41Q9UJV9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.39■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms