Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PCDH9Q9HC56 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
PCDH9Q9HC56 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
PCDH9Q9HC56 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDH9Q9HC56 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDH9Q9HC56 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.96■■□□□ 1.27
PCDH9Q9HC56 AC005703.6-201ENST00000623265 1329 ntBASIC22.96■■□□□ 1.27
PCDH9Q9HC56 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.96■■□□□ 1.27
PCDH9Q9HC56 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDH9Q9HC56 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.95■■□□□ 1.26
PCDH9Q9HC56 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDH9Q9HC56 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 AC127496.7-201ENST00000625110 1798 ntBASIC22.94■■□□□ 1.26
PCDH9Q9HC56 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 MIR6724-1-201ENST00000616420 92 ntBASIC22.94■■□□□ 1.26
PCDH9Q9HC56 MIR6724-2-201ENST00000616483 92 ntBASIC22.94■■□□□ 1.26
PCDH9Q9HC56 MIR6724-4-201ENST00000617390 92 ntBASIC22.94■■□□□ 1.26
PCDH9Q9HC56 MIR6724-3-201ENST00000622482 92 ntBASIC22.94■■□□□ 1.26
PCDH9Q9HC56 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 LINC00565-201ENST00000562710 2331 ntBASIC22.94■■□□□ 1.26
PCDH9Q9HC56 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDH9Q9HC56 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 TFPT-201ENST00000391757 774 ntTSL 5 BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 AL356441.2-201ENST00000443009 864 ntBASIC22.93■■□□□ 1.26
PCDH9Q9HC56 AC242852.2-201ENST00000615738 1807 ntBASIC22.93■■□□□ 1.26
PCDH9Q9HC56 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDH9Q9HC56 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDH9Q9HC56 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDH9Q9HC56 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 AC144652.1-201ENST00000609974 1624 ntBASIC22.9■■□□□ 1.26
PCDH9Q9HC56 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDH9Q9HC56 CLDN5-201ENST00000403084 2357 ntBASIC22.9■■□□□ 1.26
PCDH9Q9HC56 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.89■■□□□ 1.26
PCDH9Q9HC56 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PCDH9Q9HC56 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PCDH9Q9HC56 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PCDH9Q9HC56 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
PCDH9Q9HC56 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PCDH9Q9HC56 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms