Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 KRT19P1-201ENST00000405746 1186 ntBASIC24.29■■□□□ 1.48
LRCH3Q96II8 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
LRCH3Q96II8 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
LRCH3Q96II8 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.29■■□□□ 1.48
LRCH3Q96II8 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.29■■□□□ 1.48
LRCH3Q96II8 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
LRCH3Q96II8 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.28■■□□□ 1.48
LRCH3Q96II8 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
LRCH3Q96II8 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
LRCH3Q96II8 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.28■■□□□ 1.48
LRCH3Q96II8 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
LRCH3Q96II8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.28■■□□□ 1.48
LRCH3Q96II8 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.27■■□□□ 1.48
LRCH3Q96II8 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.27■■□□□ 1.48
LRCH3Q96II8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH3Q96II8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.27■■□□□ 1.48
LRCH3Q96II8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH3Q96II8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH3Q96II8 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
LRCH3Q96II8 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH3Q96II8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.27■■□□□ 1.48
LRCH3Q96II8 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
LRCH3Q96II8 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH3Q96II8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRCH3Q96II8 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.26■■□□□ 1.47
LRCH3Q96II8 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
LRCH3Q96II8 KRT18P11-201ENST00000435214 1283 ntBASIC24.26■■□□□ 1.47
LRCH3Q96II8 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
LRCH3Q96II8 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC24.26■■□□□ 1.47
LRCH3Q96II8 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
LRCH3Q96II8 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRCH3Q96II8 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.25■■□□□ 1.47
LRCH3Q96II8 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
LRCH3Q96II8 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC24.25■■□□□ 1.47
LRCH3Q96II8 SLC29A4P1-201ENST00000398760 971 ntBASIC24.25■■□□□ 1.47
LRCH3Q96II8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC24.25■■□□□ 1.47
LRCH3Q96II8 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC24.25■■□□□ 1.47
LRCH3Q96II8 AP006294.2-201ENST00000641667 209 ntBASIC24.25■■□□□ 1.47
LRCH3Q96II8 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
LRCH3Q96II8 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.24■■□□□ 1.47
LRCH3Q96II8 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRCH3Q96II8 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.24■■□□□ 1.47
LRCH3Q96II8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.24■■□□□ 1.47
LRCH3Q96II8 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
LRCH3Q96II8 MIR1224-201ENST00000408193 85 ntBASIC24.24■■□□□ 1.47
LRCH3Q96II8 AC098590.1-201ENST00000468126 897 ntBASIC24.24■■□□□ 1.47
LRCH3Q96II8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC24.24■■□□□ 1.47
LRCH3Q96II8 AC098934.4-201ENST00000564127 592 ntBASIC24.24■■□□□ 1.47
LRCH3Q96II8 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
LRCH3Q96II8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRCH3Q96II8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRCH3Q96II8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
LRCH3Q96II8 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.23■■□□□ 1.47
LRCH3Q96II8 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRCH3Q96II8 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRCH3Q96II8 RHEB-204ENST00000472642 900 ntTSL 3 BASIC24.23■■□□□ 1.47
LRCH3Q96II8 OAS3-207ENST00000551007 998 ntTSL 2 BASIC24.23■■□□□ 1.47
LRCH3Q96II8 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRCH3Q96II8 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
LRCH3Q96II8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.22■■□□□ 1.47
LRCH3Q96II8 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
LRCH3Q96II8 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LRCH3Q96II8 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
LRCH3Q96II8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC24.22■■□□□ 1.47
LRCH3Q96II8 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
LRCH3Q96II8 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC24.22■■□□□ 1.47
LRCH3Q96II8 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.22■■□□□ 1.47
LRCH3Q96II8 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LRCH3Q96II8 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC24.22■■□□□ 1.47
LRCH3Q96II8 MFSD11-216ENST00000590393 1141 ntBASIC24.22■■□□□ 1.47
LRCH3Q96II8 AC133041.1-202ENST00000642053 222 ntBASIC24.22■■□□□ 1.47
LRCH3Q96II8 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.21■■□□□ 1.47
LRCH3Q96II8 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.21■■□□□ 1.47
LRCH3Q96II8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
LRCH3Q96II8 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
LRCH3Q96II8 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.21■■□□□ 1.47
LRCH3Q96II8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.21■■□□□ 1.47
LRCH3Q96II8 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LRCH3Q96II8 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC24.21■■□□□ 1.47
LRCH3Q96II8 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LRCH3Q96II8 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH3Q96II8 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH3Q96II8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH3Q96II8 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC24.2■■□□□ 1.46
LRCH3Q96II8 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC24.2■■□□□ 1.46
LRCH3Q96II8 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH3Q96II8 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH3Q96II8 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH3Q96II8 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.2■■□□□ 1.46
LRCH3Q96II8 AC133637.1-201ENST00000624115 1537 ntBASIC24.2■■□□□ 1.46
LRCH3Q96II8 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
LRCH3Q96II8 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC24.19■■□□□ 1.46
LRCH3Q96II8 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
LRCH3Q96II8 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
LRCH3Q96II8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
LRCH3Q96II8 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
LRCH3Q96II8 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.19■■□□□ 1.46
LRCH3Q96II8 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.18■■□□□ 1.46
LRCH3Q96II8 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRCH3Q96II8 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms