Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.76■■□□□ 1.23
SHROOM3Q8TF72 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SHROOM3Q8TF72 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.74■■□□□ 1.23
SHROOM3Q8TF72 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 AC005837.3-201ENST00000612163 286 ntBASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 AC012676.1-201ENST00000574705 1949 ntBASIC22.73■■□□□ 1.23
SHROOM3Q8TF72 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 AC099791.2-201ENST00000605725 427 ntBASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.72■■□□□ 1.23
SHROOM3Q8TF72 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SHROOM3Q8TF72 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
SHROOM3Q8TF72 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SHROOM3Q8TF72 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SHROOM3Q8TF72 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SHROOM3Q8TF72 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
SHROOM3Q8TF72 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SHROOM3Q8TF72 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.23
SHROOM3Q8TF72 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.7■■□□□ 1.23
SHROOM3Q8TF72 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.7■■□□□ 1.23
SHROOM3Q8TF72 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.7■■□□□ 1.23
SHROOM3Q8TF72 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
SHROOM3Q8TF72 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
SHROOM3Q8TF72 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.7■■□□□ 1.23
SHROOM3Q8TF72 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 AC004687.1-201ENST00000579003 1625 ntBASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 AC241377.3-202ENST00000626088 1088 ntBASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 AC241585.3-202ENST00000628937 1088 ntBASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 AC245100.8-202ENST00000629247 1058 ntBASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
SHROOM3Q8TF72 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 LINC01960-201ENST00000563759 1884 ntBASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 AC096631.2-201ENST00000436136 790 ntBASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 C1orf229-201ENST00000623686 2258 ntBASIC22.69■■□□□ 1.22
SHROOM3Q8TF72 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SHROOM3Q8TF72 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms