Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 SP2-202ENST00000613139 908 ntTSL 5 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 MPST-208ENST00000628507 698 ntTSL 5 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 ME3-201ENST00000323418 1068 ntTSL 5 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 LSR-205ENST00000427250 1606 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 HLA-L-209ENST00000420110 1011 ntBASIC6.79□□□□□ -1.32
SYNE1Q8NF91 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 AC126544.1-201ENST00000580842 1059 ntBASIC6.79□□□□□ -1.32
SYNE1Q8NF91 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
SYNE1Q8NF91 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 CDCA4P2-201ENST00000441182 718 ntBASIC6.78□□□□□ -1.32
SYNE1Q8NF91 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 TERF1P2-201ENST00000583350 1212 ntBASIC6.78□□□□□ -1.32
SYNE1Q8NF91 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 AL358852.1-201ENST00000623174 1268 ntBASIC6.78□□□□□ -1.32
SYNE1Q8NF91 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 CREM-210ENST00000374721 2020 ntTSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 DLX3-202ENST00000512495 834 ntTSL 2 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 SLC47A1P1-202ENST00000449666 945 ntBASIC6.78□□□□□ -1.32
SYNE1Q8NF91 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SYNE1Q8NF91 AC099791.1-201ENST00000416440 715 ntBASIC6.78□□□□□ -1.32
SYNE1Q8NF91 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC6.77□□□□□ -1.32
SYNE1Q8NF91 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 AL022069.1-201ENST00000568025 1636 ntBASIC6.77□□□□□ -1.33
SYNE1Q8NF91 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 ASB1-202ENST00000409297 878 ntTSL 5 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 VGF-203ENST00000611537 1622 ntTSL 5 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC6.77□□□□□ -1.33
SYNE1Q8NF91 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms