Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.71■□□□□ 0.91
CLIP4Q8N3C7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP4Q8N3C7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP4Q8N3C7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 BX664725.1-201ENST00000438252 379 ntBASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 RARRES2P1-201ENST00000474487 481 ntBASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CLIP4Q8N3C7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CLIP4Q8N3C7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 MIR6722-201ENST00000617286 78 ntBASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.66■□□□□ 0.9
CLIP4Q8N3C7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 AL353803.4-201ENST00000565882 1934 ntBASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.65■□□□□ 0.9
CLIP4Q8N3C7 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLIP4Q8N3C7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CLIP4Q8N3C7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLIP4Q8N3C7 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP4Q8N3C7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP4Q8N3C7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP4Q8N3C7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.63■□□□□ 0.89
CLIP4Q8N3C7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms