Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.64■■■□□ 2.5
NPHP3Q7Z494 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC30.63■■■□□ 2.49
NPHP3Q7Z494 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC30.63■■■□□ 2.49
NPHP3Q7Z494 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.63■■■□□ 2.49
NPHP3Q7Z494 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP3Q7Z494 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
NPHP3Q7Z494 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
NPHP3Q7Z494 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC30.62■■■□□ 2.49
NPHP3Q7Z494 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
NPHP3Q7Z494 MIR663A-201ENST00000385250 93 ntBASIC30.62■■■□□ 2.49
NPHP3Q7Z494 KRT19P1-201ENST00000405746 1186 ntBASIC30.62■■■□□ 2.49
NPHP3Q7Z494 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC30.62■■■□□ 2.49
NPHP3Q7Z494 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
NPHP3Q7Z494 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC30.62■■■□□ 2.49
NPHP3Q7Z494 STX4-202ENST00000394998 1498 ntTSL 2 BASIC30.62■■■□□ 2.49
NPHP3Q7Z494 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC30.62■■■□□ 2.49
NPHP3Q7Z494 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP3Q7Z494 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP3Q7Z494 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.61■■■□□ 2.49
NPHP3Q7Z494 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.61■■■□□ 2.49
NPHP3Q7Z494 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.6■■■□□ 2.49
NPHP3Q7Z494 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP3Q7Z494 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC30.6■■■□□ 2.49
NPHP3Q7Z494 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP3Q7Z494 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP3Q7Z494 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP3Q7Z494 CD99P1-205ENST00000527459 561 ntBASIC30.6■■■□□ 2.49
NPHP3Q7Z494 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC30.6■■■□□ 2.49
NPHP3Q7Z494 AC066615.1-201ENST00000640911 628 ntBASIC30.6■■■□□ 2.49
NPHP3Q7Z494 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP3Q7Z494 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC30.59■■■□□ 2.49
NPHP3Q7Z494 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP3Q7Z494 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
NPHP3Q7Z494 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.59■■■□□ 2.49
NPHP3Q7Z494 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP3Q7Z494 RARA-203ENST00000394086 2008 ntTSL 2 BASIC30.58■■■□□ 2.49
NPHP3Q7Z494 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP3Q7Z494 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP3Q7Z494 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP3Q7Z494 GPX1P1-201ENST00000388829 606 ntBASIC30.58■■■□□ 2.49
NPHP3Q7Z494 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC30.58■■■□□ 2.49
NPHP3Q7Z494 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP3Q7Z494 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.49
NPHP3Q7Z494 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 DUSP8P4-201ENST00000399538 1761 ntBASIC30.57■■■□□ 2.48
NPHP3Q7Z494 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP3Q7Z494 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 KRT18P11-201ENST00000435214 1283 ntBASIC30.56■■■□□ 2.48
NPHP3Q7Z494 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 WT1-AS_3.1-201ENST00000613262 234 ntBASIC30.56■■■□□ 2.48
NPHP3Q7Z494 AC011767.1-201ENST00000617410 1153 ntBASIC30.56■■■□□ 2.48
NPHP3Q7Z494 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP3Q7Z494 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP3Q7Z494 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP3Q7Z494 AC142086.2-201ENST00000569753 217 ntBASIC30.55■■■□□ 2.48
NPHP3Q7Z494 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP3Q7Z494 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC30.55■■■□□ 2.48
NPHP3Q7Z494 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP3Q7Z494 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
NPHP3Q7Z494 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
NPHP3Q7Z494 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms