Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 AC127496.7-201ENST00000625110 1798 ntBASIC21.57■■□□□ 1.04
FOXA1P55317 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.57■■□□□ 1.04
FOXA1P55317 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
FOXA1P55317 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA1P55317 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.56■■□□□ 1.04
FOXA1P55317 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXA1P55317 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
FOXA1P55317 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
FOXA1P55317 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.56■■□□□ 1.04
FOXA1P55317 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.56■■□□□ 1.04
FOXA1P55317 AC021242.3-201ENST00000607598 1377 ntBASIC21.56■■□□□ 1.04
FOXA1P55317 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXA1P55317 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXA1P55317 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
FOXA1P55317 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FOXA1P55317 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
FOXA1P55317 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
FOXA1P55317 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.56■■□□□ 1.04
FOXA1P55317 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
FOXA1P55317 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXA1P55317 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
FOXA1P55317 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
FOXA1P55317 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.55■■□□□ 1.04
FOXA1P55317 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXA1P55317 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.55■■□□□ 1.04
FOXA1P55317 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.55■■□□□ 1.04
FOXA1P55317 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
FOXA1P55317 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.55■■□□□ 1.04
FOXA1P55317 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXA1P55317 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXA1P55317 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
FOXA1P55317 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXA1P55317 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
FOXA1P55317 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXA1P55317 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.54■■□□□ 1.04
FOXA1P55317 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
FOXA1P55317 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXA1P55317 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
FOXA1P55317 AC139530.1-201ENST00000575312 1977 ntBASIC21.54■■□□□ 1.04
FOXA1P55317 AC080038.3-201ENST00000623346 1952 ntBASIC21.54■■□□□ 1.04
FOXA1P55317 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.53■■□□□ 1.04
FOXA1P55317 AC087742.1-201ENST00000575880 1738 ntBASIC21.53■■□□□ 1.04
FOXA1P55317 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.53■■□□□ 1.04
FOXA1P55317 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.53■■□□□ 1.04
FOXA1P55317 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.53■■□□□ 1.04
FOXA1P55317 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.53■■□□□ 1.04
FOXA1P55317 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.53■■□□□ 1.04
FOXA1P55317 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA1P55317 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.52■■□□□ 1.04
FOXA1P55317 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.52■■□□□ 1.04
FOXA1P55317 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
FOXA1P55317 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.52■■□□□ 1.04
FOXA1P55317 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
FOXA1P55317 MIR6722-201ENST00000617286 78 ntBASIC21.52■■□□□ 1.04
FOXA1P55317 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FOXA1P55317 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
FOXA1P55317 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
FOXA1P55317 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA1P55317 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA1P55317 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
FOXA1P55317 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA1P55317 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
FOXA1P55317 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
FOXA1P55317 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA1P55317 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA1P55317 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.51■■□□□ 1.03
FOXA1P55317 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXA1P55317 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA1P55317 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA1P55317 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.5■■□□□ 1.03
FOXA1P55317 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA1P55317 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA1P55317 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.5■■□□□ 1.03
FOXA1P55317 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA1P55317 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
FOXA1P55317 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
FOXA1P55317 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXA1P55317 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXA1P55317 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms