Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.5■■□□□ 1.03
HNF4AP41235 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
HNF4AP41235 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.49■■□□□ 1.03
HNF4AP41235 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
HNF4AP41235 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
HNF4AP41235 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
HNF4AP41235 AC009102.2-201ENST00000606772 1639 ntBASIC21.49■■□□□ 1.03
HNF4AP41235 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HNF4AP41235 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.49■■□□□ 1.03
HNF4AP41235 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.49■■□□□ 1.03
HNF4AP41235 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
HNF4AP41235 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.49■■□□□ 1.03
HNF4AP41235 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HNF4AP41235 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HNF4AP41235 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HNF4AP41235 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HNF4AP41235 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
HNF4AP41235 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
HNF4AP41235 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HNF4AP41235 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HNF4AP41235 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
HNF4AP41235 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HNF4AP41235 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.48■■□□□ 1.03
HNF4AP41235 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.48■■□□□ 1.03
HNF4AP41235 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.48■■□□□ 1.03
HNF4AP41235 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.48■■□□□ 1.03
HNF4AP41235 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.48■■□□□ 1.03
HNF4AP41235 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.48■■□□□ 1.03
HNF4AP41235 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HNF4AP41235 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.47■■□□□ 1.03
HNF4AP41235 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
HNF4AP41235 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HNF4AP41235 AC079834.2-201ENST00000609776 1949 ntBASIC21.47■■□□□ 1.03
HNF4AP41235 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HNF4AP41235 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HNF4AP41235 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.47■■□□□ 1.03
HNF4AP41235 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.47■■□□□ 1.03
HNF4AP41235 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.47■■□□□ 1.03
HNF4AP41235 MIR3621-201ENST00000580529 85 ntBASIC21.47■■□□□ 1.03
HNF4AP41235 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HNF4AP41235 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.47■■□□□ 1.03
HNF4AP41235 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.47■■□□□ 1.03
HNF4AP41235 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.47■■□□□ 1.03
HNF4AP41235 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HNF4AP41235 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HNF4AP41235 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HNF4AP41235 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
HNF4AP41235 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.46■■□□□ 1.03
HNF4AP41235 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.46■■□□□ 1.03
HNF4AP41235 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.46■■□□□ 1.03
HNF4AP41235 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HNF4AP41235 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
HNF4AP41235 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.45■■□□□ 1.02
HNF4AP41235 C1orf229-201ENST00000623686 2258 ntBASIC21.45■■□□□ 1.02
HNF4AP41235 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
HNF4AP41235 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.45■■□□□ 1.02
HNF4AP41235 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HNF4AP41235 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
HNF4AP41235 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HNF4AP41235 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HNF4AP41235 DUX4L4-201ENST00000566884 1269 ntBASIC21.45■■□□□ 1.02
HNF4AP41235 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.45■■□□□ 1.02
HNF4AP41235 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HNF4AP41235 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HNF4AP41235 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HNF4AP41235 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
HNF4AP41235 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.44■■□□□ 1.02
HNF4AP41235 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
HNF4AP41235 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.44■■□□□ 1.02
HNF4AP41235 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.44■■□□□ 1.02
HNF4AP41235 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.44■■□□□ 1.02
HNF4AP41235 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
HNF4AP41235 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HNF4AP41235 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HNF4AP41235 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.43■■□□□ 1.02
HNF4AP41235 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.43■■□□□ 1.02
HNF4AP41235 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 C17orf82-201ENST00000623772 1530 ntBASIC21.43■■□□□ 1.02
HNF4AP41235 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.43■■□□□ 1.02
HNF4AP41235 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
HNF4AP41235 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HNF4AP41235 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
HNF4AP41235 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HNF4AP41235 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HNF4AP41235 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.42■■□□□ 1.02
HNF4AP41235 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms