Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.85■■□□□ 1.41
SCN1AP35498 BX842568.3-201ENST00000418104 571 ntBASIC23.85■■□□□ 1.41
SCN1AP35498 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
SCN1AP35498 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
SCN1AP35498 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SCN1AP35498 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.84■■□□□ 1.41
SCN1AP35498 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.84■■□□□ 1.41
SCN1AP35498 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.84■■□□□ 1.41
SCN1AP35498 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SCN1AP35498 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN1AP35498 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN1AP35498 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SCN1AP35498 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SCN1AP35498 AC027682.1-201ENST00000562846 899 ntBASIC23.84■■□□□ 1.41
SCN1AP35498 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.84■■□□□ 1.41
SCN1AP35498 AL353803.4-201ENST00000565882 1934 ntBASIC23.84■■□□□ 1.41
SCN1AP35498 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN1AP35498 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SCN1AP35498 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.84■■□□□ 1.41
SCN1AP35498 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.84■■□□□ 1.41
SCN1AP35498 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.83■■□□□ 1.41
SCN1AP35498 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN1AP35498 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN1AP35498 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
SCN1AP35498 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN1AP35498 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SCN1AP35498 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
SCN1AP35498 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
SCN1AP35498 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.83■■□□□ 1.4
SCN1AP35498 CA15P2-201ENST00000611168 834 ntBASIC23.83■■□□□ 1.4
SCN1AP35498 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.82■■□□□ 1.4
SCN1AP35498 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN1AP35498 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN1AP35498 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.82■■□□□ 1.4
SCN1AP35498 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN1AP35498 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SCN1AP35498 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN1AP35498 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.82■■□□□ 1.4
SCN1AP35498 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.82■■□□□ 1.4
SCN1AP35498 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN1AP35498 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN1AP35498 AC004687.1-201ENST00000579003 1625 ntBASIC23.82■■□□□ 1.4
SCN1AP35498 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SCN1AP35498 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
SCN1AP35498 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
SCN1AP35498 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCN1AP35498 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
SCN1AP35498 AC233992.3-201ENST00000607491 485 ntBASIC23.81■■□□□ 1.4
SCN1AP35498 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN1AP35498 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN1AP35498 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN1AP35498 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCN1AP35498 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.81■■□□□ 1.4
SCN1AP35498 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
SCN1AP35498 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN1AP35498 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN1AP35498 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.8■■□□□ 1.4
SCN1AP35498 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.8■■□□□ 1.4
SCN1AP35498 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SCN1AP35498 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN1AP35498 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SCN1AP35498 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCN1AP35498 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN1AP35498 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.79■■□□□ 1.4
SCN1AP35498 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
SCN1AP35498 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SCN1AP35498 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN1AP35498 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN1AP35498 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN1AP35498 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.79■■□□□ 1.4
SCN1AP35498 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.79■■□□□ 1.4
SCN1AP35498 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.79■■□□□ 1.4
SCN1AP35498 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCN1AP35498 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCN1AP35498 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCN1AP35498 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCN1AP35498 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCN1AP35498 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.78■■□□□ 1.4
SCN1AP35498 AC091305.1-201ENST00000479476 895 ntBASIC23.78■■□□□ 1.4
SCN1AP35498 DUSP8P3-201ENST00000399571 1760 ntBASIC23.78■■□□□ 1.4
SCN1AP35498 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.78■■□□□ 1.4
SCN1AP35498 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN1AP35498 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.77■■□□□ 1.4
SCN1AP35498 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.77■■□□□ 1.4
SCN1AP35498 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN1AP35498 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
SCN1AP35498 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN1AP35498 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN1AP35498 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.77■■□□□ 1.4
SCN1AP35498 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN1AP35498 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SCN1AP35498 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SCN1AP35498 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.4
SCN1AP35498 OR2I1P-207ENST00000453522 948 ntBASIC23.77■■□□□ 1.4
SCN1AP35498 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.77■■□□□ 1.4
SCN1AP35498 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SCN1AP35498 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN1AP35498 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
SCN1AP35498 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.77■■□□□ 1.4
SCN1AP35498 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms